View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_low_29 (Length: 530)

Name: NF1390_low_29
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_low_29
NF1390_low_29
[»] chr4 (10 HSPs)
chr4 (7-218)||(18727471-18727682)
chr4 (193-432)||(18727726-18727966)
chr4 (214-432)||(18720313-18720530)
chr4 (214-432)||(18675782-18676000)
chr4 (236-428)||(18651751-18651938)
chr4 (7-194)||(18651419-18651626)
chr4 (7-152)||(18720052-18720197)
chr4 (51-194)||(18675559-18675703)
chr4 (396-432)||(18686004-18686040)
chr4 (396-432)||(18693531-18693567)
[»] chr6 (6 HSPs)
chr6 (207-379)||(27656886-27657063)
chr6 (13-172)||(27656590-27656747)
chr6 (13-97)||(26660158-26660239)
chr6 (13-97)||(26766129-26766210)
chr6 (212-260)||(26877454-26877502)
chr6 (47-96)||(26963356-26963405)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 18727471 - 18727682
Alignment:
Q  7 tccaataatattcaaaaactttttcattaaccaataaatttactgtgtttaggctattaactttttcactcaaaagatgcattcagtccacacagcacaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18727471 tccaataatattcaaaaactttttcattaaccaataaatttactgtgtttaggctattaactttttcactcaaaagatgcattcagtccacacagcacaa 18727570  T
Q  107 taagtaaatagaagggaagaacaagcctagattttcttaatttttacaatttcaacatcaaatgtctaaaatttacaataagatggtcaaaataacatta 206  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18727571 taagtaaatagaaggggagaacaagcctagattttcttaatctttacaatttcaacatcaaatgtctaaaatttacaataagatggtcaaaataacatta 18727670  T
Q  207 gtaacatttatg 218  Q
    ||||||||||||    
T  18727671 gtaacatttatg 18727682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 193 - 432
Target Start/End: Original strand, 18727726 - 18727966
Alignment:
Q  193 tcaaaataacattagtaacatttatgtgtaacaatgttttcaattataatttctaaaatttccatcaatcaagctggatgaaaaacatccttcctatgaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18727726 tcaaaataacattagtaacatttatgtgtaacaatgttttcaattataatttctaaaatttccatcaatcaagctggataaaaaacatccttcctatgaa 18727825  T
Q  293 ataccgacacagacacggacaccagactcgacattga-ttgtcaacaccaatagtaatttgcgaaaatcacatgtgtcggtattggatgccttagataag 391  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| ||| ||    
T  18727826 ataccgacacagacacggacaccaaactcgacattgatttgtcaacaccaatagtaatttgagaaaatcacctgtgttggtattggatgccttcgatcag 18727925  T
Q  392 aagtgtgtgtctacaaagcattttcgacagaatcttatatc 432  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  18727926 aagtgtgtgtctacaaagcattttggacagaatcttatatc 18727966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 214 - 432
Target Start/End: Original strand, 18720313 - 18720530
Alignment:
Q  214 ttatgtgtaacaatgttttcaattataatttctaaaatttccatcaatcaagctggatgaaaaacatccttcctatgaaataccgacacagacacggaca 313  Q
    |||||||||||||||||  || |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  18720313 ttatgtgtaacaatgtt--cagttataatttctaaaatgtccatcaatcaagctggataaaaaacatccttcctatgaaataccgacaaagacacggaca 18720410  T
Q  314 ccagactcgacattga-ttgtcaacaccaatagtaatttgcgaaaatcacatgtgtcggtattggatgccttagataagaagtgtgtgtctacaaagcat 412  Q
    |||||||||||| ||| |||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||    
T  18720411 ccagactcgacactgatttgtcaacactaatggtaatttgagaaaatcacatatgtcggtattggatgccttcgatctgaagtgtgtgtctacaaagcat 18720510  T
Q  413 tttcgacagaatcttatatc 432  Q
    | ||||||||||||||||||    
T  18720511 tatcgacagaatcttatatc 18720530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 214 - 432
Target Start/End: Original strand, 18675782 - 18676000
Alignment:
Q  214 ttatgtgtaacaatgttttcaattataatttctaaaatttccatcaatcaagctggatgaaaaa-catccttcctatgaaataccgacacagacacggac 312  Q
    |||||||||||||||||  || |||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  18675782 ttatgtgtaacaatgtt--cagttataatttctaaaatgtccatcaatcaagctggataaaaaaacatccttcctatgaaataccgacacagacacggac 18675879  T
Q  313 accagactcgacattgatt-gtcaacaccaatagtaatttgcgaaaatcacatgtgtcggtattggatgccttagataagaagtgtgtgtctacaaagca 411  Q
    ||||||||||||| ||||| |||||||| ||| |||||||| ||||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||    
T  18675880 accagactcgacactgatttgtcaacactaatggtaatttgagaaaatcacatatgtcggtattggatgccttcgatctgaagtgtgtgtctacaaagca 18675979  T
Q  412 ttttcgacagaatcttatatc 432  Q
    || ||||||||||||||||||    
T  18675980 ttatcgacagaatcttatatc 18676000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 236 - 428
Target Start/End: Original strand, 18651751 - 18651938
Alignment:
Q  236 ttataatttctaaaatttccatcaatcaagctggatgaaaaacatccttcctatgaaataccgacacagacacggacaccagactcgacattga-ttgtc 334  Q
    ||||||||||||||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  18651751 ttataatttctaaaatttccatcaatcgagctggaa-aaaaacatgcttcctatgaaataccgacacagacacggacaccagactcgacactgatttgtc 18651849  T
Q  335 aacaccaatagtaatttgcgaaaatcacatgtgtcggtattggatgccttagataagaagtgtgtgtctacaaagcattttcgacagaatctta 428  Q
    |||||||||||      | ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||    
T  18651850 aacaccaatag-----cgagaaaatcacatgtgtcggtattggatgccctggatcagaagtgtgtgtctacaaagcattttcgacagaatctta 18651938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 18651419 - 18651626
Alignment:
Q  7 tccaataatattcaaaaactttttcattaaccaataaatttactgtgttt--aggctattaactttttcactcaaaagatgcattcagtccacacagcac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||| | || ||    
T  18651419 tccaataatattcaaaaactttttcattaaccaataaatttactgtgtttaaaggctattaactttttcactcaaaagatgcattcaatccatatagaac 18651518  T
Q  105 aataag----taaatagaagggaagaacaagcctagattttcttaatttttacaa--------------tttcaacatcaaatgtctaaaatttacaata 186  Q
    ||||||    |||||||||||| |||||||||||||||||||||||| |||||||              |||||||||||||||||||||||||||||||    
T  18651519 aataagtacataaatagaaggggagaacaagcctagattttcttaatctttacaataactcatgaagactttcaacatcaaatgtctaaaatttacaata 18651618  T
Q  187 agatggtc 194  Q
    ||||||||    
T  18651619 agatggtc 18651626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 18720052 - 18720197
Alignment:
Q  7 tccaataatattcaaaaactttttcattaaccaataaatttactgtgtttaggctattaactttttcactcaaaagatgcattcagtccacacagcacaa 106  Q
    |||||||||||||||||||||||||||||||||||||||     ||||||| |||||||||||||||||||||| |||||||||| |||||| |||||||    
T  18720052 tccaataatattcaaaaactttttcattaaccaataaata----gtgtttatgctattaactttttcactcaaacgatgcattcaatccacatagcacaa 18720147  T
Q  107 ----taagtaaatagaagggaagaacaagcctagattttcttaattttta 152  Q
        ||| |||||||||||| |||||| ||||||||| ||||||| ||||    
T  18720148 taggtaaataaatagaaggggagaacatgcctagattctcttaatcttta 18720197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 18675559 - 18675703
Alignment:
Q  51 gtgtttaggctattaactttttcactcaaaagatgcattcagtccacacag--cacaataag----taaatagaagggaagaacaagcctagattttctt 144  Q
    ||||||| |||||||||||||||||||||| |||||||||| |||||| ||  |||||||||    |||||||||||| |||||| ||||||||||||||    
T  18675559 gtgtttatgctattaactttttcactcaaacgatgcattcaatccacatagtacacaataagtaaataaatagaaggggagaacacgcctagattttctt 18675658  T
Q  145 aatttttacaatttcaacatcaaatgtctaaaatttacaataagatggtc 194  Q
    ||| ||||     | | ||| || || |||||||||||||||||||||||    
T  18675659 aatcttta-----taagcataaagtggctaaaatttacaataagatggtc 18675703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 432
Target Start/End: Original strand, 18686004 - 18686040
Alignment:
Q  396 gtgtgtctacaaagcattttcgacagaatcttatatc 432  Q
    |||||||||||||||||||||||||||||||||||||    
T  18686004 gtgtgtctacaaagcattttcgacagaatcttatatc 18686040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 432
Target Start/End: Original strand, 18693531 - 18693567
Alignment:
Q  396 gtgtgtctacaaagcattttcgacagaatcttatatc 432  Q
    |||||||||||||||||||||||||||||||||||||    
T  18693531 gtgtgtctacaaagcattttcgacagaatcttatatc 18693567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 207 - 379
Target Start/End: Original strand, 27656886 - 27657063
Alignment:
Q  207 gtaacatttatgtgtaacaatgttttcaattataatttctaaaatttccatcaatcaagctggatgaaaaacatccttcctatgaaataccgacacagac 306  Q
    |||| |||||||||||| |||||||||| ||||||||| ||||  |||||||||| |||| |||  ||||| ||||| ||||||||  ||||| ||||||    
T  27656886 gtaagatttatgtgtaaaaatgttttcatttataatttataaagcttccatcaatgaagcggga--aaaaatatcctccctatgaagcaccgaaacagac 27656983  T
Q  307 acggacaccagactcg------acattga-ttgtcaacaccaatagtaatttgcgaaaatcacatgtgtcggtattggat 379  Q
    ||||| ||| ||||||      ||||||| ||||||||||||||||||||||  |||||||| ||||||| |||||||||    
T  27656984 acggataccggactcgacacttacattgatttgtcaacaccaatagtaatttaagaaaatcagatgtgtcagtattggat 27657063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 27656590 - 27656747
Alignment:
Q  13 aatattcaaaaactttttcattaaccaataaatttactgtgtttaggctattaactttttcactcaaaagatgcattca----gtccacacagcacaata 108  Q
    ||||||||||||||| ||||||||||| |||   | |||||||||||||||||||| ||||| ||||||| | ||||||      || || | || ||||    
T  27656590 aatattcaaaaacttcttcattaaccactaa---tgctgtgtttaggctattaactatttcagtcaaaagctccattcaaaatccccccataccaaaata 27656686  T
Q  109 agtaaatagaagggaagaacaagcctagattttcttaatttttacaatttcaacatcaaatgtc 172  Q
    | |||||||||||| ||||||||| ||  |||||||||| |||||||   ||||||||||||||    
T  27656687 aataaatagaaggggagaacaagcttaagttttcttaatatttacaa---caacatcaaatgtc 27656747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 26660239 - 26660158
Alignment:
Q  13 aatattcaaaaactttttcattaaccaataaatttactgtgtttaggctattaactttttcactcaaaagatgcattcagtccac 97  Q
    |||||||||||| || ||||||||||| |||   |||||||||||||||| ||||| |||||||||||||||  ||||| |||||    
T  26660239 aatattcaaaaatttattcattaaccattaa---tactgtgtttaggctactaactatttcactcaaaagatcgattcaatccac 26660158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 26766210 - 26766129
Alignment:
Q  13 aatattcaaaaactttttcattaaccaataaatttactgtgtttaggctattaactttttcactcaaaagatgcattcagtccac 97  Q
    |||||||||||| || ||||||||||| |||   |||||||||||||||| ||||| |||||||||||||||  ||||| |||||    
T  26766210 aatattcaaaaatttattcattaaccattaa---tactgtgtttaggctactaactatttcactcaaaagatcgattcaatccac 26766129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 26877502 - 26877454
Alignment:
Q  212 atttatgtgtaacaatgttttcaattataatttctaaaatttccatcaa 260  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  26877502 atttatgtgtaaaaatgttttcatttataatttcttaaatttccatcaa 26877454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 26963405 - 26963356
Alignment:
Q  47 tactgtgtttaggctattaactttttcactcaaaagatgcattcagtcca 96  Q
    ||||||||||||||||||||||  || ||||||||||| |||||| ||||    
T  26963405 tactgtgtttaggctattaactacttaactcaaaagatccattcaatcca 26963356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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