View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_35 (Length: 508)
Name: NF1390_low_35
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 266 - 474
Target Start/End: Original strand, 3854900 - 3855101
Alignment:
| Q |
266 |
gttgttgttaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataa |
365 |
Q |
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| T |
3854900 |
gttgttgctaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaac----- |
3854994 |
T |
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| Q |
366 |
tgataataatattcctcatcctcttttctcaaagctaagctccacacgagttaaattgaaaaactgagttgtctgtactggcgtgacatagttaaacaat |
465 |
Q |
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| T |
3854995 |
-gacaataatattcctcatcctc-tttctcaaagctaagctccacatgagttaaattgaaaaactgagttgtctgtactggcgcgacatagttaaacaat |
3855092 |
T |
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| Q |
466 |
ttcaagggt |
474 |
Q |
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| T |
3855093 |
ttcaagggt |
3855101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 3854752 - 3854833
Alignment:
| Q |
106 |
tatcataggcattgcagttgggaacaaattgtggatgcaatgaattatgatcatcaacgcttaatccatagcctcctcctcc |
187 |
Q |
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| T |
3854752 |
tatcaaagacattgcagttggggacaaattgtggatgcaatgaattatgatcatcaacgcttgatccatagcctcctcctcc |
3854833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 274 - 434
Target Start/End: Complemental strand, 4141730 - 4141580
Alignment:
| Q |
274 |
taatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataatgataata |
373 |
Q |
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| T |
4141730 |
taatatgatagagttaacaaaccttatgaatcacaatactttgaagagaggggcaggcgcggatgaatttcttcaaccaatccca---------atgata |
4141640 |
T |
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| Q |
374 |
atattcctcatcctcttttctcaaagctaagctccacacgagttaaattgaaaaactgagt |
434 |
Q |
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| T |
4141639 |
atattcctcatcctc-cttctcaaagctaagctccatatgagttaaattgaaaaactgagt |
4141580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 4141904 - 4141819
Alignment:
| Q |
107 |
atcataggcattgcagttgggaacaaattgtggatgcaatgaattatgatcatcaacgcttaatccatagcctcctcctcctccga |
192 |
Q |
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| T |
4141904 |
atcaaaggcattgcagttggggacaaattgtggatgcaatgaattatgatcatcgccgcttaatccataacctactcctcctccga |
4141819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 4141557 - 4141516
Alignment:
| Q |
439 |
tgtactggcgtgacatagttaaacaatttcaagggtgtttgt |
480 |
Q |
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| T |
4141557 |
tgtactggtgcgacatagtcaaacaatttcaagggtgtttgt |
4141516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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