View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_42 (Length: 478)
Name: NF1390_low_42
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 123 - 398
Target Start/End: Complemental strand, 30995383 - 30995102
Alignment:
| Q |
123 |
tggccaaaacttatgattcaactcgatggtatttatgtagttatctaactgctatttcttaaacttatagcaagcttgctaatatctcataattcccctt |
222 |
Q |
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| T |
30995383 |
tggccaatacttatgattcaactcgatggtatttatgtagttatctaactgctatttcttaaacttatagcaagcttgcgaatatctcataattcccctt |
30995284 |
T |
|
| Q |
223 |
tcatcttctacaacatctaaaatcacaacatcatatttaaattgaaggctataaaaacataaaacgaatattgaaagcttcaagtttgcaaaataatgga |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30995283 |
tcatcttctacaacatctaaaatcacaacatcatatttaaattgaaggctataaaaacataaaacgaatattgaaagcttcaagtttgcaaaataatgga |
30995184 |
T |
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| Q |
323 |
aacttggattcctctttgatta------ttcctttcaaattttaacaacttttctttgcattatccttatagacgaccattg |
398 |
Q |
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||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30995183 |
aacttggatccctctttgattattacttttcctttcaatttttaacaacttttctttgcattatccttatagacgaccattg |
30995102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 30995491 - 30995451
Alignment:
| Q |
15 |
aataaacgatgcatacacaactgtaatataacgattctcgg |
55 |
Q |
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| T |
30995491 |
aataaacgatgcatacacaactgtaatataacgattctcgg |
30995451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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