View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_50 (Length: 459)
Name: NF1390_low_50
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 29 - 455
Target Start/End: Complemental strand, 33426789 - 33426365
Alignment:
| Q |
29 |
agatacatagagattgtttgtgcatctttatgcatgttgtaaaatatagaaataagaaaacgttgacaaaaagaagtggagaaagatgtagggaatatat |
128 |
Q |
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| T |
33426789 |
agatacatagagattgtttgtgcatctttatgcatgttgtaaaatatagaaataagaaaacgttgacaaaaagaagtggagaaagatgtagggaatatat |
33426690 |
T |
|
| Q |
129 |
ggtattacctactatatacatttgtgtgggcacatgcaaactcaaacatgcatgttgcatataccaaaggattagaaaaggaaaatgatatacattgaaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
33426689 |
ggtattacctactatatacatttgtgtgggcacatgcaaactcaaacatgcatgttgc--ataccaaaggattagaaaaggaaaatgatttacattgaaa |
33426592 |
T |
|
| Q |
229 |
atgttgtatgtattcagtgaagcctaagtttcatatcaagatatatcagccacaacattatcttagtatatcagatttccaaaattttattctgtcagat |
328 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33426591 |
atgttgtatgtatttagtgaagcctaagtttcatatcaagatatatcagccacaacattatcttagtatatcagatttccaaaattttattctgtcagat |
33426492 |
T |
|
| Q |
329 |
gtatcactcacacggggacttgagcctannnnnnnnaaagagctaaatgtaacttccacgcgaaagtgtagaattgatctatacaagaggttgatctctc |
428 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33426491 |
gtatcactcacacgggaacttgagcctatttttttcaaagagctaaatgtaacttccacgcgaaagtgcggaattgatctatacaagaggttgatctctc |
33426392 |
T |
|
| Q |
429 |
ctaacaaatattttttcatacacaata |
455 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
33426391 |
ctaacaaatattttttcatacacaata |
33426365 |
T |
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