View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_51 (Length: 458)
Name: NF1390_low_51
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 53 - 280
Target Start/End: Original strand, 31866537 - 31866760
Alignment:
| Q |
53 |
agaagactcttattcaagattaaannnnnnnngacttcaacatagaaatgataggatgcatgcttaaaatattttataaaaatcaatatacgtaaatgtt |
152 |
Q |
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| T |
31866537 |
agaacactcttattcaagattaaaaaaaatgtgacttcaacatagaaatgataggatgcatgcttaaaatattttataaaaatcaatatacgtaaatgtt |
31866636 |
T |
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| Q |
153 |
cccaataaacattcaaagtcatggattctctaaaacatcaattgaagggaatgatgatccatttctaagttttacggtaggcattcttgcacttcagcag |
252 |
Q |
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| T |
31866637 |
cctaataaacattcaaagtcatggattatctaaaacatcaatt----ggaatgatgatccatttctaagttttacggtaggcattcttgcacttcagcag |
31866732 |
T |
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| Q |
253 |
ttttttctatctagcatttaaaagatcc |
280 |
Q |
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| T |
31866733 |
ttttttctttctagcatttaaaagatcc |
31866760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 31856671 - 31856777
Alignment:
| Q |
156 |
aataaacattcaaagtcatggattc-tctaaa---acatcaattgaagggaatgatgatccatttctaagttttacggtaggcattcttgcacttcagca |
251 |
Q |
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|||||||| |||||||||||| ||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
31856671 |
aataaacactcaaagtcatgggttcctctaaacaaacattaattgaaggaaatgatgatccatttctaagttttacggtaggcattcttacacttcggct |
31856770 |
T |
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| Q |
252 |
gtttttt |
258 |
Q |
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||||||| |
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| T |
31856771 |
gtttttt |
31856777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 31866848 - 31866881
Alignment:
| Q |
367 |
atgcaaatgtatctcgtttttctcttggtctctg |
400 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31866848 |
atgcaaatgtatctcgtttttctcttggtctctg |
31866881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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