View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_low_53 (Length: 451)

Name: NF1390_low_53
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_low_53
NF1390_low_53
[»] chr1 (21 HSPs)
chr1 (134-441)||(46895827-46896138)
chr1 (219-339)||(19547034-19547154)
chr1 (238-337)||(34582657-34582756)
chr1 (253-339)||(18032190-18032276)
chr1 (202-327)||(14758572-14758697)
chr1 (240-339)||(44584056-44584155)
chr1 (226-327)||(26297716-26297820)
chr1 (231-316)||(26765978-26766063)
chr1 (239-334)||(38294014-38294110)
chr1 (240-339)||(14890492-14890590)
chr1 (226-327)||(30529367-30529468)
chr1 (202-339)||(44920219-44920356)
chr1 (240-339)||(14892041-14892139)
chr1 (237-339)||(18038894-18038996)
chr1 (245-327)||(41649899-41649981)
chr1 (286-331)||(9500924-9500969)
chr1 (283-339)||(26533765-26533821)
chr1 (262-339)||(6983018-6983095)
chr1 (274-339)||(25095610-25095675)
chr1 (229-293)||(46729219-46729283)
chr1 (270-339)||(36331618-36331687)
[»] chr5 (14 HSPs)
chr5 (219-336)||(11010248-11010365)
chr5 (238-336)||(40944271-40944369)
chr5 (199-332)||(42877252-42877385)
chr5 (220-339)||(248447-248567)
chr5 (231-307)||(18988786-18988862)
chr5 (243-324)||(22528740-22528821)
chr5 (202-325)||(16980752-16980876)
chr5 (284-339)||(26663636-26663691)
chr5 (284-339)||(26935231-26935286)
chr5 (238-339)||(35947644-35947745)
chr5 (238-339)||(42265437-42265538)
chr5 (271-327)||(4857273-4857329)
chr5 (250-298)||(14328455-14328503)
chr5 (239-307)||(15206500-15206568)
[»] chr3 (15 HSPs)
chr3 (197-332)||(21813119-21813254)
chr3 (237-339)||(29212701-29212803)
chr3 (243-339)||(36494176-36494273)
chr3 (218-339)||(40629093-40629214)
chr3 (231-327)||(49682180-49682276)
chr3 (237-327)||(32606385-32606475)
chr3 (238-339)||(7278169-7278270)
chr3 (254-327)||(39144981-39145054)
chr3 (249-320)||(3383356-3383427)
chr3 (245-320)||(46895927-46896002)
chr3 (284-339)||(53040470-53040525)
chr3 (269-327)||(31294383-31294441)
chr3 (286-339)||(2831548-2831601)
chr3 (259-328)||(25095464-25095533)
chr3 (231-327)||(3973826-3973922)
[»] chr8 (20 HSPs)
chr8 (240-339)||(12787849-12787948)
chr8 (237-339)||(10565346-10565448)
chr8 (240-339)||(44042538-44042637)
chr8 (237-339)||(4166496-4166598)
chr8 (238-327)||(4507917-4508006)
chr8 (238-339)||(24457828-24457929)
chr8 (237-316)||(6904192-6904271)
chr8 (198-327)||(20142403-20142532)
chr8 (226-306)||(14237162-14237242)
chr8 (272-323)||(39312194-39312245)
chr8 (238-339)||(34336477-34336578)
chr8 (231-327)||(33285922-33286018)
chr8 (199-327)||(43238106-43238234)
chr8 (229-336)||(41105993-41106100)
chr8 (227-278)||(41646611-41646662)
chr8 (249-327)||(32332866-32332944)
chr8 (236-334)||(40464410-40464508)
chr8 (274-339)||(5020092-5020157)
chr8 (412-441)||(14170420-14170449)
chr8 (285-329)||(2335799-2335843)
[»] chr4 (20 HSPs)
chr4 (238-339)||(46506326-46506429)
chr4 (240-339)||(19652634-19652733)
chr4 (238-327)||(7388788-7388877)
chr4 (226-327)||(38380471-38380572)
chr4 (202-327)||(38949027-38949152)
chr4 (249-320)||(40781425-40781496)
chr4 (236-327)||(32893024-32893115)
chr4 (253-339)||(24916382-24916468)
chr4 (238-323)||(5047221-5047306)
chr4 (231-328)||(41370165-41370262)
chr4 (231-339)||(49011880-49011988)
chr4 (284-339)||(30978698-30978753)
chr4 (254-332)||(23133068-23133146)
chr4 (253-323)||(31871074-31871144)
chr4 (237-307)||(36721589-36721659)
chr4 (269-327)||(40071322-40071380)
chr4 (240-313)||(40062309-40062382)
chr4 (245-314)||(50247943-50248012)
chr4 (249-333)||(23016237-23016321)
chr4 (239-339)||(40480175-40480275)
[»] scaffold0172 (1 HSPs)
scaffold0172 (220-327)||(13478-13585)
[»] chr2 (15 HSPs)
chr2 (226-327)||(32770762-32770863)
chr2 (240-339)||(27921891-27921991)
chr2 (219-338)||(18734354-18734473)
chr2 (226-327)||(32438074-32438175)
chr2 (237-335)||(11580424-11580522)
chr2 (226-338)||(36260429-36260541)
chr2 (285-328)||(25093866-25093909)
chr2 (238-339)||(29260331-29260432)
chr2 (287-339)||(29865825-29865877)
chr2 (238-293)||(7933341-7933396)
chr2 (268-327)||(11252722-11252781)
chr2 (249-339)||(8964393-8964483)
chr2 (245-339)||(9153486-9153579)
chr2 (245-315)||(33617966-33618036)
chr2 (229-327)||(33962938-33963036)
[»] chr6 (6 HSPs)
chr6 (239-339)||(5678476-5678576)
chr6 (220-339)||(10570928-10571047)
chr6 (245-339)||(6586428-6586522)
chr6 (242-306)||(1252754-1252818)
chr6 (241-306)||(1243372-1243437)
chr6 (262-307)||(7465510-7465555)
[»] chr7 (18 HSPs)
chr7 (219-339)||(6771838-6771958)
chr7 (229-327)||(3298231-3298329)
chr7 (198-327)||(44319819-44319948)
chr7 (262-339)||(36061530-36061607)
chr7 (285-334)||(39170331-39170380)
chr7 (240-339)||(24557734-24557833)
chr7 (229-324)||(31902744-31902839)
chr7 (245-339)||(34681693-34681787)
chr7 (238-327)||(6707891-6707980)
chr7 (238-339)||(17883317-17883418)
chr7 (262-339)||(22739463-22739540)
chr7 (238-339)||(26402786-26402887)
chr7 (242-339)||(41898255-41898352)
chr7 (280-327)||(2699270-2699317)
chr7 (255-339)||(5495991-5496075)
chr7 (240-339)||(6775232-6775331)
chr7 (413-441)||(7873508-7873536)
chr7 (275-323)||(38452188-38452236)
[»] scaffold0633 (1 HSPs)
scaffold0633 (245-327)||(5015-5097)
[»] scaffold0027 (1 HSPs)
scaffold0027 (226-332)||(122457-122563)
[»] scaffold0009 (1 HSPs)
scaffold0009 (261-316)||(25585-25640)
[»] scaffold0246 (1 HSPs)
scaffold0246 (239-339)||(18114-18214)
[»] scaffold0007 (1 HSPs)
scaffold0007 (411-439)||(201304-201332)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 134 - 441
Target Start/End: Complemental strand, 46896138 - 46895827
Alignment:
Q  134 tttttggaaggagccttaaataaaatagtcgtcgccatgttgtcaactaagcatatttgtatattggaaaatgttaaggagttttctaaggtcattcttt 233  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  46896138 tttttggaaggagctttaaataaaatagtcgtcgctatgttgtcaactaagcatatttgtatattgggaaatgttaatgagttttttaaggtcattcttt 46896039  T
Q  234 acggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaat 333  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46896038 acggactttagatagtaagtttttatagaaatttatgcattcaatgcatcggaaattgaaatattagactttttcaataaataatttcttaatttagaat 46895939  T
Q  334 ccttaac-agtaccttaagaacacctattaac---aaaacccttgtatatttcattgtcgctttgtaatcaatgnnnnnnntaaggcttaattgcagttt 429  Q
    | ||||| ||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||||    
T  46895938 ctttaacaagtaccttaggaacacctattaacaaaaaaacccttgtatatttcattgtcgctttgtaatcaacgaaaaaaataaggcttaattgcagttt 46895839  T
Q  430 tgaccccctatg 441  Q
    || |||||||||    
T  46895838 tggccccctatg 46895827  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 19547034 - 19547154
Alignment:
Q  219 ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat 318  Q
    |||||| || |||||| |||||||| ||||||||||||||| |||| || ||||||||||| ||||| ||||||| |||| ||| |||||||| ||||||    
T  19547034 ctaagggcactctttaaggactttatatagtaagtttttatagaaacttgtgcattcaatgcatcgggaattgaagtattggacattttcaatgaataat 19547133  T
Q  319 ttcttaatttagaatccttaa 339  Q
    |||||| ||  ||||||||||    
T  19547134 ttcttacttgggaatccttaa 19547154  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 34582756 - 34582657
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 337  Q
    ||||||||||||||||||||||  ||| |||||||||||||| ||| |||||||||  |||| ||||||||| | |||||||| |||||||| |||||||    
T  34582756 actttagatagtaagtttttatgaaaacttatgcattcaatgcatcagaaattgaagcattatactttttcattgaataattttttaatttaaaatcctt 34582657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 253 - 339
Target Start/End: Complemental strand, 18032276 - 18032190
Alignment:
Q  253 tttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||||| |||| ||||||||| |||| |||||||||||||  |||| ||||||||||||||||||||||||||| |||||| ||||    
T  18032276 tttttatggaaacttatgcatttaatgcatcggaaattgaagcattaaactttttcaataaataatttcttaattcagaatctttaa 18032190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 327
Target Start/End: Complemental strand, 14758697 - 14758572
Alignment:
Q  202 aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga 301  Q
    ||||||||| ||||  ||||||| || |||||| |||||||| ||||||| |||||||  ||| || ||||||||||| |||| |||||||||| ||| |    
T  14758697 aaatgttaacgagtgctctaaggacactctttaaggactttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 14758598  T
Q  302 ctttttcaataaataatttcttaatt 327  Q
    |||||| ||  |||||||||||||||    
T  14758597 cttttttaaggaataatttcttaatt 14758572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 44584056 - 44584155
Alignment:
Q  240 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||||||||||||||||||  ||| || |||||| |||  || | ||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||    
T  44584056 tttagatagtaagtttttatgaaaacttgtgcatttaatacattgaaaattgaaacattagactttttcaacaaatagtttcttaatttagattccttaa 44584155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 26297820 - 26297716
Alignment:
Q  226 cattctttacggactttagatagtaagtttttattgaaatttatgca---ttcaatggatcggaaattgaaatattagactttttcaataaataatttct 322  Q
    ||||||||| |||||||||||||||||||||||| |||| || ||||   ||| ||| |||||||||||||||||||  |||||||||| |||| ||||     
T  26297820 cattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaatgaatagtttca 26297721  T
Q  323 taatt 327  Q
    |||||    
T  26297720 taatt 26297716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 26766063 - 26765978
Alignment:
Q  231 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaata 316  Q
    |||| |||||||||||||||||||| |||  ||| |||||||||||||  ||| ||||||||||||||| ||||||||||| ||||    
T  26766063 tttaaggactttagatagtaagtttatataaaaacttatgcattcaatccatcagaaattgaaatattaaactttttcaatgaata 26765978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 38294110 - 38294014
Alignment:
Q  239 ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaata-ttagactttttcaataaataatttcttaatttagaatc 334  Q
    ||||| ||||||||||||||| |||| || ||||||||||| || ||||||| ||||| ||| |||||||| || || |||||||||||||||||||    
T  38294110 ctttaaatagtaagtttttatagaaacttgtgcattcaatgcattggaaattaaaatatttatactttttctatgaacaatttcttaatttagaatc 38294014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 14890492 - 14890590
Alignment:
Q  240 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||||||||| |||  || ||||||| ||||||||||| ||||||||||||| |||||   ||||||||| |||||||| |||||| |||||||||||    
T  14890492 tttagatagtaaatttg-atagaaatttgtgcattcaatgtatcggaaattgaagtattaagttttttcaattaataattttttaattaagaatccttaa 14890590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 30529468 - 30529367
Alignment:
Q  226 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 325  Q
    ||||||||| |||||||| ||||||| ||||||| |||| || |||||| |||| ||| ||||||||| | ||| | ||||||||  |||||||||||||    
T  30529468 cattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcagaaattgaagtgttaaattttttcaaagaataatttcttaa 30529369  T
Q  326 tt 327  Q
    ||    
T  30529368 tt 30529367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 339
Target Start/End: Complemental strand, 44920356 - 44920219
Alignment:
Q  202 aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga 301  Q
    ||||||||| ||||   |||||| || | |||| |||||| | ||||||| ||||||| |||| || ||||||||||| |||  |||||||| | ||| |    
T  44920356 aaatgttaacgagtgccctaagggcactttttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatgcatcataaattgaagtgttaaa 44920257  T
Q  302 ctttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||| ||| ||||||||||||||| |||| ||||||    
T  44920256 cttttttaatgaataatttcttaattgagaaaccttaa 44920219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 14892041 - 14892139
Alignment:
Q  240 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||||||||| |||  || ||||||| || |||||||| ||||||||||||| |||||   ||||||||| |||||||| |||||| |||||||||||    
T  14892041 tttagatagtaaatttg-atagaaatttgtgtattcaatgtatcggaaattgaagtattaagttttttcaattaataattttttaattaagaatccttaa 14892139  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 18038996 - 18038894
Alignment:
Q  237 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct 336  Q
    ||||||||||| ||| |||||||  |||||| || |||||||| |||||||||||||  |||||| |||||||||  ||  |||||||||| ||||| ||    
T  18038996 gactttagataataattttttatgaaaatttgtgtattcaatgcatcggaaattgaagcattagattttttcaatgcattgtttcttaattcagaatact 18038897  T
Q  337 taa 339  Q
    |||    
T  18038896 taa 18038894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 41649981 - 41649899
Alignment:
Q  245 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    ||||||| ||||||| |||| |||||||||||||| || |||||||||||| ||| ||||||| ||  |||||||| ||||||    
T  41649981 atagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaatt 41649899  T

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Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 9500924 - 9500969
Alignment:
Q  286 aaattgaaatattagactttttcaataaataatttcttaatttaga 331  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  9500924 aaattgaagtattagactttttcaataaatagtttcttaatttaga 9500969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 26533765 - 26533821
Alignment:
Q  283 cggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||||||||||  |||||||||||||||  |||||||||||||| |||||||||||    
T  26533765 cggaaattgaaacgttagactttttcaattgataatttcttaattgagaatccttaa 26533821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 6983018 - 6983095
Alignment:
Q  262 aaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||||||| || ||||| || | ||||||||||||| |||| ||| ||| |||||||||||||||| |||| |||||    
T  6983018 aaatttatgtatccaatgcattgaaaattgaaatatttgactcttttaatgaataatttcttaatttggaatacttaa 6983095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 25095675 - 25095610
Alignment:
Q  274 tcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||| |||| ||||||||||||| |||||||| |  ||||||||||||  ||||||||||||||    
T  25095675 tcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttcttcttttagaatccttaa 25095610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 46729283 - 46729219
Alignment:
Q  229 tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaa 293  Q
    |||||| |||||||| ||||||| ||||||| |||| || ||||||||||| ||||||| |||||    
T  46729283 tctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatgcatcggaatttgaa 46729219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 36331618 - 36331687
Alignment:
Q  270 gcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||||||| || | |||||||| ||||  |||||||||||||| | ||||||||||  ||||||||||    
T  36331618 gcattcaatgaattgaaaattgaattatttaactttttcaataaacattttcttaattaggaatccttaa 36331687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 219 - 336
Target Start/End: Complemental strand, 11010365 - 11010248
Alignment:
Q  219 ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat 318  Q
    |||||| |||| |||| |||||| |||||||| |||||||| |||| || || |||||||| ||| ||||||||| ||||||||||||||||| |||| |    
T  11010365 ctaagggcattttttaaggacttcagatagtatgtttttatggaaagttgtgtattcaatgcatcagaaattgaagtattagactttttcaatgaatagt 11010266  T
Q  319 ttcttaatttagaatcct 336  Q
    ||||||||||||||||||    
T  11010265 ttcttaatttagaatcct 11010248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 40944271 - 40944369
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct 336  Q
    |||||||||||||| ||||||| ||||||| | ||||||||| |||| ||||||||  |||| ||||||||||| ||||||||||||||||||||||||    
T  40944271 actttagatagtaaatttttatggaaatttgtacattcaatgcatcgaaaattgaagcattatactttttcaatgaataatttcttaatttagaatcct 40944369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 332
Target Start/End: Complemental strand, 42877385 - 42877252
Alignment:
Q  199 ggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatatt 298  Q
    |||||||||||| |||| |||||||| || ||||||  ||||||| ||||||| ||||||| |||| || || |||||||  || | |||||||||| ||    
T  42877385 ggaaaatgttaacgagtattctaagggcactctttaaagactttaaatagtaaatttttatggaaaattgtgtattcaatacattgaaaattgaaatttt 42877286  T
Q  299 agactttttcaataaataatttcttaatttagaa 332  Q
    | |||||||  || |||||||||| |||| ||||    
T  42877285 aaacttttttcatgaataatttctcaattgagaa 42877252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 248447 - 248567
Alignment:
Q  220 taaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagac-tttttcaataaataat 318  Q
    ||||| || |||||| |||||| | ||||||| ||||||| |||| || ||||||||||  ||||||||||||| | ||| || ||||| || |||||||    
T  248447 taagggcactctttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatacatcggaaattgaagtgttaaacttttttaaagaaataat 248546  T
Q  319 ttcttaatttagaatccttaa 339  Q
    ||||||||| |||| ||||||    
T  248547 ttcttaattgagaaaccttaa 248567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 18988862 - 18988786
Alignment:
Q  231 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagacttttt 307  Q
    |||| |||| ||||||||||| |||||||  ||| |||||||||||||| || ||||||| || |||||||||||||    
T  18988862 tttaaggacattagatagtaaatttttatgaaaacttatgcattcaatgcattggaaatttaagtattagacttttt 18988786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 22528740 - 22528821
Alignment:
Q  243 agatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctta 324  Q
    |||| |||| |||||||  ||||||||| ||| |||| |||||||||||||  || | ||||||||||| ||||||||||||    
T  22528740 agattgtaaatttttatgaaaatttatgtatttaatgtatcggaaattgaagcatcaaactttttcaatgaataatttctta 22528821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 325
Target Start/End: Complemental strand, 16980876 - 16980752
Alignment:
Q  202 aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga 301  Q
    ||||| ||| |||| | |||||| || ||||||  ||||||| ||||||  |||||||  ||| |||| ||||||||| ||||||||||||| | ||| |    
T  16980876 aaatgctaacgagtatcctaaggacactctttaaagactttaaatagtacatttttatgaaaaattatacattcaatgtatcggaaattgaagtgttaaa 16980777  T
Q  302 ctttttcaata-aataatttcttaa 325  Q
    |||| |||| | |||||||||||||    
T  16980776 ctttctcaaaagaataatttcttaa 16980752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 26663691 - 26663636
Alignment:
Q  284 ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||| |||||||| |||||||| || ||||||||||||| |||||||| |||||    
T  26663691 ggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaa 26663636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 26935286 - 26935231
Alignment:
Q  284 ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||| |||||||| |||||||| || ||||||||||||| |||||||| |||||    
T  26935286 ggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaa 26935231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 35947745 - 35947644
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 337  Q
    |||||| ||||||||  ||||| ||||||| || |||| ||| |||| ||||||||||||||   |||| |||| |||| |||||| ||| || ||||||    
T  35947745 actttaaatagtaagggtttatagaaatttgtgaattctatgcatcgaaaattgaaatattaagtttttccaatgaatagtttcttgattgagtatcctt 35947646  T
Q  338 aa 339  Q
    ||    
T  35947645 aa 35947644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 42265538 - 42265437
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 337  Q
    |||||| ||||||||||||| |  || |||||| | |||||| || | |||||||||| || |||||||| ||  |||||||| || ||| |||||||||    
T  42265538 actttatatagtaagtttttgtctaagtttatgaaatcaatgcattgaaaattgaaatttttgacttttttaaagaataatttttttattaagaatcctt 42265439  T
Q  338 aa 339  Q
    ||    
T  42265438 aa 42265437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 4857329 - 4857273
Alignment:
Q  271 cattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    ||||||||| |||| ||||| |||| ||| ||||||||||  |||||||||||||||    
T  4857329 cattcaatgtatcgaaaattaaaatgttaaactttttcaaagaataatttcttaatt 4857273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 14328455 - 14328503
Alignment:
Q  250 aagtttttattgaaatttatgcattcaatggatcggaaattgaaatatt 298  Q
    ||||||||||  |||||||||||||||||| |||| |||||||| ||||    
T  14328455 aagtttttataaaaatttatgcattcaatgaatcgaaaattgaattatt 14328503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 15206500 - 15206568
Alignment:
Q  239 ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagacttttt 307  Q
    ||||| ||| ||| |||||||  |||||| ||||||||||| |||| |||||||| |||| ||||||||    
T  15206500 ctttaaataataattttttatgaaaatttgtgcattcaatgaatcgaaaattgaagtattggacttttt 15206568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 332
Target Start/End: Original strand, 21813119 - 21813254
Alignment:
Q  197 ttggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaata 296  Q
    |||||||||||||| |||| | |||||| || |||||| ||| |||| ||||||| ||||||| |||| |||||||||||||| ||||||| || || |     
T  21813119 ttggaaaatgttaatgagtgtcctaagggcactctttaaggattttaaatagtaaatttttatggaaaattatgcattcaatgcatcggaatttaaagtg 21813218  T
Q  297 ttagactttttcaataaataatttcttaatttagaa 332  Q
    ||| ||||||||||| ||||||||||||||| ||||    
T  21813219 ttaaactttttcaatgaataatttcttaattgagaa 21813254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 29212803 - 29212701
Alignment:
Q  237 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct 336  Q
    ||||||||||| ||| ||||||| |||| || ||||||||||  |||  ||||||||  |||||||||||||||| |||| |||||||||||| ||||||    
T  29212803 gactttagatattaaatttttatagaaacttgtgcattcaatacatcataaattgaagcattagactttttcaatgaatagtttcttaatttaaaatcct 29212704  T
Q  337 taa 339  Q
    |||    
T  29212703 taa 29212701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 36494273 - 36494176
Alignment:
Q  243 agatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga-ctttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||||||||||||||| |||| || ||||||||||  || |||||||||| |||||||  ||||||||| |||| ||||||||||  ||||||||||    
T  36494273 agatagtaagtttttatggaaacttgtgcattcaatacattggaaattgaagtattagatttttttcaatgaatagtttcttaattgggaatccttaa 36494176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 339
Target Start/End: Complemental strand, 40629214 - 40629093
Alignment:
Q  218 tctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataa 317  Q
    ||||||| |||||||||   |||||||||| |||| ||||||  ||| || |||||| |||| ||| ||||||  || |||||| ||||||||||||||     
T  40629214 tctaagggcattctttaaaaactttagataataagattttataaaaacttgtgcatttaatgtatcagaaattagaacattagattttttcaataaatat 40629115  T
Q  318 tttcttaatttagaatccttaa 339  Q
    ||| |||||| |||||||||||    
T  40629114 ttttttaattgagaatccttaa 40629093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 49682276 - 49682180
Alignment:
Q  231 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||| |||||||| ||||||| ||||||| |||| || |||||||||||  |||||||||||||| ||| ||||||| ||  |||||||| ||||||    
T  49682276 tttaaggactttaaatagtaaatttttatagaaaattgtgcattcaatgcttcggaaattgaaatgttaaacttttttaaggaataattttttaatt 49682180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 32606385 - 32606475
Alignment:
Q  237 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    ||||||| ||| ||| |||||||  ||| |||||||||||||| ||||||||||||||| |||   |||||||| | ||||||| ||||||    
T  32606385 gactttaaataataaatttttatgaaaaattatgcattcaatgcatcggaaattgaaatgttaacttttttcaaaatataattttttaatt 32606475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 7278169 - 7278270
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 337  Q
    |||||| ||||||||||||||| |||| || |||||| |||| || |||||| |||||||||  |||||  ||| |||| |||| ||||| || ||||||    
T  7278169 actttaaatagtaagtttttatcgaaacttgtgcattgaatgcattggaaatcgaaatattaagcttttctaatgaatagtttcgtaattgagtatcctt 7278268  T
Q  338 aa 339  Q
    ||    
T  7278269 aa 7278270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 39145054 - 39144981
Alignment:
Q  254 ttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||||| |||| |||||||||||||| ||||||||||||| | ||| | ||||| || ||| ||||||||||||    
T  39145054 ttttatagaaaattatgcattcaatgcatcggaaattgaagtgttaaaattttttaaaaaacaatttcttaatt 39144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 3383427 - 3383356
Alignment:
Q  249 taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataattt 320  Q
    |||| ||||||||||||||||  |||||||| ||| ||||||||| |||| |||||||| ||| || |||||    
T  3383427 taagattttattgaaatttatatattcaatgtatcagaaattgaagtatttgacttttttaatgaacaattt 3383356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 46895927 - 46896002
Alignment:
Q  245 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataattt 320  Q
    |||||||||||||||  |||||||||||||||||| |||  |||||||| | ||  ||||||||  ||||||||||    
T  46895927 atagtaagtttttataaaaatttatgcattcaatgcatcaaaaattgaagtctttaactttttctttaaataattt 46896002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 53040525 - 53040470
Alignment:
Q  284 ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||||||| |||| || ||||| ||  |||||||||||||||||||||||||||    
T  53040525 ggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttaa 53040470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 31294441 - 31294383
Alignment:
Q  269 tgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    ||||||||||| |||||||||| || | ||| ||||||||||  |||||||||||||||    
T  31294441 tgcattcaatgcatcggaaattaaagtgttaaactttttcaaagaataatttcttaatt 31294383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 2831601 - 2831548
Alignment:
Q  286 aaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||||||||||| |||||| | || |||||||||||| |||| ||||||||||    
T  2831601 aaattgaaatatttgactttattaaaaaataatttcttgatttggaatccttaa 2831548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 25095533 - 25095464
Alignment:
Q  259 ttgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattt 328  Q
    |||||||||||| |||||||| |||  |||||||| ||   || |||||||||||||||||| |||||||    
T  25095533 ttgaaatttatgtattcaatgaatcataaattgaagtaactgattttttcaataaataattttttaattt 25095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 3973922 - 3973826
Alignment:
Q  231 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||| |||||| | ||||||| ||||||| |||| || |||||| |||| |||||||||||||   ||  ||||||| ||  |||||||||||||||    
T  3973922 tttaaggacttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataatttcttaatt 3973826  T

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Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 12787948 - 12787849
Alignment:
Q  240 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||||||||||||||||||  |||||| |||||| |||| || ||||||||||  |||| |||||||||||||||||||| |||||||||||| |||||    
T  12787948 tttagatagtaagtttttatgaaaatttgtgcatttaatgaattggaaattgaagcattatactttttcaataaataattttttaatttagaattcttaa 12787849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 10565448 - 10565346
Alignment:
Q  237 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct 336  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||  |||  ||||| || ||||||||||||||||| |||| |||||||||||||||| ||    
T  10565448 gactttagatagtaaatttttatggaaatttgtgcattcaatacatcaaaaattaaagtattagactttttcaatgaatagtttcttaatttagaattct 10565349  T
Q  337 taa 339  Q
    |||    
T  10565348 taa 10565346  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 44042637 - 44042538
Alignment:
Q  240 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||| ||||||||||||||| ||||||| ||||||||||| || |||||||||| ||||  ||||||||||| |||| ||||||||||  ||||||||||    
T  44042637 tttaaatagtaagtttttatagaaatttgtgcattcaatgcattggaaattgaagtattgaactttttcaatgaatagtttcttaattatgaatccttaa 44042538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 4166598 - 4166496
Alignment:
Q  237 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct 336  Q
    |||||||||||  |||||||||| |||| || ||||||||||| || |||||||||||||||  ||||||||||| ||||||||||| |||  |||||||    
T  4166598 gactttagatataaagtttttatggaaacttgtgcattcaatgtattggaaattgaaatattgaactttttcaatgaataatttcttgattatgaatcct 4166499  T
Q  337 taa 339  Q
    |||    
T  4166498 taa 4166496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 327
Target Start/End: Original strand, 4507917 - 4508006
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    ||||||||| |||||||||||| |||| ||| ||||| |||| ||| ||||||||||||| |   |||||||||||||| ||||||||||    
T  4507917 actttagatggtaagtttttatggaaacttacgcatttaatgcatcagaaattgaaatatgatgttttttcaataaatagtttcttaatt 4508006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 24457929 - 24457828
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 337  Q
    |||||| |||||||||||||||  ||| || ||| || |||| ||  |||||||||| |||||||||||||||| |||| ||| |||||||||| |||||    
T  24457929 actttaaatagtaagtttttatgaaaacttgtgcttttaatgcatttgaaattgaaacattagactttttcaatgaatagttttttaatttagattcctt 24457830  T
Q  338 aa 339  Q
    ||    
T  24457829 aa 24457828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 6904271 - 6904192
Alignment:
Q  237 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaata 316  Q
    ||||||||||||||| ||||||| |||| || ||| ||||||| |||||||||||||  |||| ||||||||||| ||||    
T  6904271 gactttagatagtaattttttatggaaacttgtgcgttcaatgcatcggaaattgaagcattaaactttttcaatgaata 6904192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 20142403 - 20142532
Alignment:
Q  198 tggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatat 297  Q
    ||||||||||||| |||| |||| ||  |||| |||| |||||||| ||| ||| ||||||| | || || |||||| |||| |||| ||||| || | |    
T  20142403 tggaaaatgttaacgagtattcttagagcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgt 20142502  T
Q  298 tagactttttcaataaataatttcttaatt 327  Q
    || ||||||| || ||||||||||||||||    
T  20142503 taaactttttaaaaaaataatttcttaatt 20142532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 14237242 - 14237162
Alignment:
Q  226 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttt 306  Q
    ||||||||| |||||||| ||||||| ||||||| |||| || |||||| |||| ||||||||||||| | ||| ||||||    
T  14237242 cattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaaactttt 14237162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 39312194 - 39312245
Alignment:
Q  272 attcaatggatcggaaattgaaatattagactttttcaataaataatttctt 323  Q
    |||||||| ||||||||||||| ||||| ||||||||||| |||||||||||    
T  39312194 attcaatgcatcggaaattgaagtattaaactttttcaatgaataatttctt 39312245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 34336477 - 34336578
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 337  Q
    |||||| ||||||||||||| |  || |||||| | |||||| || |||||||||| | || |||||||| ||  ||||||||||| ||| |||||||||    
T  34336477 actttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttgacttttttaaagaataatttctttattaagaatcctt 34336576  T
Q  338 aa 339  Q
    ||    
T  34336577 aa 34336578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 33285922 - 33286018
Alignment:
Q  231 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||| |||||||| ||||||| |||||||  ||| || || ||| |||  |||| |||||||||| ||| | |||||||| ||||||||||||||||    
T  33285922 tttaaggactttaaatagtaaatttttatgaaaaattgtgtatttaatacatcgaaaattgaaatgttaaattttttcaaaaaataatttcttaatt 33286018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 327
Target Start/End: Original strand, 43238106 - 43238234
Alignment:
Q  199 ggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatatt 298  Q
    |||||||||||| ||||   |||||  || |||||| | |||||| ||||||| ||||||| |||| || | |||| |||| |||| |||||||| | ||    
T  43238106 ggaaaatgttaacgagtgccctaagtgcactctttaagaactttaaatagtaaatttttatggaaaattctacatttaatgcatcgaaaattgaagtgtt 43238205  T
Q  299 agactttttcaataaataatttcttaatt 327  Q
    | ||||||| ||  |||||||||||||||    
T  43238206 aaacttttttaaggaataatttcttaatt 43238234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 336
Target Start/End: Original strand, 41105993 - 41106100
Alignment:
Q  229 tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattt 328  Q
    |||||| |||| ||| || |||||||||||   ||| || || |||||||| || | |||||||| |||| |||||||| ||| | ||||||||||||||    
T  41105993 tctttaaggaccttaaatggtaagtttttacgaaaaattgtgaattcaatgcattgaaaattgaactatttgacttttttaatgattaatttcttaattt 41106092  T
Q  329 agaatcct 336  Q
     |||||||    
T  41106093 ggaatcct 41106100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 41646662 - 41646611
Alignment:
Q  227 attctttacggactttagatagtaagtttttattgaaatttatgcattcaat 278  Q
    |||||||| ||||||||||||||||||||||||  ||| || ||||||||||    
T  41646662 attctttaaggactttagatagtaagtttttatgaaaacttgtgcattcaat 41646611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 32332944 - 32332866
Alignment:
Q  249 taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||||||||||  ||| |||| ||||||||| |||| |||| ||| ||||| || |||||||| |||||||| ||||||    
T  32332944 taagtttttatgaaaacttatacattcaatgcatcgaaaatcgaagtattaaacattttcaatgaataattttttaatt 32332866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 40464410 - 40464508
Alignment:
Q  236 ggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatc 334  Q
    |||||||  ||||||| ||||||| | || || |||||||||   |||| |||||||||||||| || |||||||| |||| ||| |||||| ||||||    
T  40464410 ggactttgaatagtaaatttttatggtaacttgtgcattcaaaacatcgaaaattgaaatattaaacattttcaatgaatagttttttaattgagaatc 40464508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 5020092 - 5020157
Alignment:
Q  274 tcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||| ||||||||||||||| || |||||||| |  |||| |||||||  ||||||||||||||    
T  5020092 tcaatgtatcggaaattgaaatctttgacttttttataaaattatttcttcttttagaatccttaa 5020157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 14170420 - 14170449
Alignment:
Q  412 aaggcttaattgcagttttgaccccctatg 441  Q
    ||||||||||||||||||||||||||||||    
T  14170420 aaggcttaattgcagttttgaccccctatg 14170449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 2335799 - 2335843
Alignment:
Q  285 gaaattgaaatattagactttttcaataaataatttcttaattta 329  Q
    ||||||||||||||  | ||||| |||||||||||||||||||||    
T  2335799 gaaattgaaatatttaatttttttaataaataatttcttaattta 2335843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 46506429 - 46506326
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga--ctttttcaataaataatttcttaatttagaatcc 335  Q
    ||||||||||||||| |||| | ||||||||| |||| |||| ||||||||||||| |||||||   |||||||||||||| |||||||||| |||||||    
T  46506429 actttagatagtaagcttttgtggaaatttatccatttaatgcatcggaaattgaagtattagattttttttcaataaatagtttcttaattaagaatcc 46506330  T
Q  336 ttaa 339  Q
    ||||    
T  46506329 ttaa 46506326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 19652733 - 19652634
Alignment:
Q  240 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||||||||||||||||||  |||||| ||||||||||| || ||||||| || ||||| || |||||||| |||||| ||||||||||||| ||||||    
T  19652733 tttagatagtaagtttttatgaaaatttgtgcattcaatgcattggaaattaaactattatacattttcaatgaataatatcttaatttagaaaccttaa 19652634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 7388877 - 7388788
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||||||||||||| ||||||| |||| || |||||| |||| ||||||||||| || ||||||||||||||||  ||| ||||||||||    
T  7388877 actttagatagtaaatttttatggaaacttgtgcatttaatgcatcggaaattggaacattagactttttcaatggatattttcttaatt 7388788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 38380572 - 38380471
Alignment:
Q  226 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 325  Q
    ||||||||| |||||||| ||||||| ||||||| |||| ||||||||| ||||  |||||||||||| | ||| ||||||||||  || ||||| ||||    
T  38380572 cattctttaaggactttaaatagtaaatttttatggaaaattatgcatttaatgcttcggaaattgaagtgttaaactttttcaaagaaaaatttattaa 38380473  T
Q  326 tt 327  Q
    ||    
T  38380472 tt 38380471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 327
Target Start/End: Original strand, 38949027 - 38949152
Alignment:
Q  202 aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga 301  Q
    ||||||||| |||| || ||||| || |||||| |||||| | ||||||| |||||||  ||| || ||||||||||| ||||||||||||| | ||| |    
T  38949027 aaatgttaacgagtgttttaagggcactctttaaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgcatcggaaattgaagtgttaaa 38949126  T
Q  302 ctttttcaataaataatttcttaatt 327  Q
     ||||| || ||||||||| ||||||    
T  38949127 tttttttaagaaataattttttaatt 38949152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 40781425 - 40781496
Alignment:
Q  249 taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataattt 320  Q
    ||||||||||| ||||| ||||||||||||| ||| |||||| ||  |||| ||||||||||||||||||||    
T  40781425 taagtttttatggaaatctatgcattcaatgcatcagaaattaaagcattaaactttttcaataaataattt 40781496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 32893115 - 32893024
Alignment:
Q  236 ggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||||||| |||||||  |||||| |||| || ||||||||||| |||| |||||||||| ||| |||||||  | |||||| |||||||||    
T  32893115 ggactttaaatagtaaacttttatagaaaattgtgcattcaatgcatcgaaaattgaaatgttaaactttttttaaaaataaattcttaatt 32893024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 24916382 - 24916468
Alignment:
Q  253 tttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||||| |||| || || |||||||||||| | ||||||| |||| ||  |||||||| |||| |||||||||| |||||||||||    
T  24916382 tttttatagaaacttgtgtattcaatggatcaggaattgaagtattggatattttcaatgaatattttcttaattgagaatccttaa 24916468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 5047306 - 5047221
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctt 323  Q
    |||||| ||||||||||||| || || |||||| | |||||| || |||||||||||| || |||||||  ||| |||||||||||    
T  5047306 actttaaatagtaagttttttttaaagtttatgaaatcaatgcattggaaattgaaatttttgacttttgtaatgaataatttctt 5047221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 41370165 - 41370262
Alignment:
Q  231 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattt 328  Q
    |||| |||||||  |||||||||||||||  |||||| || | |||||| || | |||||||||||||  |||||||  | |||||||||||||||||    
T  41370165 tttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttttttgagaaataatttcttaattt 41370262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 339
Target Start/End: Original strand, 49011880 - 49011988
Alignment:
Q  231 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttag 330  Q
    |||| |||||||| ||||||||||||| |  ||| || |||||| |||| |||| |||||||| ||||| ||||||| ||| ||||  ||||| ||| |     
T  49011880 tttaaggactttaaatagtaagtttttgtgaaaacttgtgcatttaatgcatcgaaaattgaagtattaaacttttttaatgaatagattcttgattaaa 49011979  T
Q  331 aatccttaa 339  Q
    |||||||||    
T  49011980 aatccttaa 49011988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 30978698 - 30978753
Alignment:
Q  284 ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||||||| |||| |||||||| ||||||| |||||||||||| |||| |||||    
T  30978698 ggaaattgaactatttgacttttttaataaatcatttcttaatttggaatgcttaa 30978753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 23133068 - 23133146
Alignment:
Q  254 ttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaa 332  Q
    |||||| |||| || || |||||||| ||||||||||||| | ||| ||||||| ||  ||||||||||||||| ||||    
T  23133068 ttttatagaaaattgtgtattcaatgcatcggaaattgaagtgttaaacttttttaaggaataatttcttaattgagaa 23133146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 31871074 - 31871144
Alignment:
Q  253 tttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctt 323  Q
    ||||| || ||||||||| | |||||| ||||||||||||||||||  ||||||| |  ||||||||||||    
T  31871074 tttttttttaaatttatgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttctt 31871144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 36721589 - 36721659
Alignment:
Q  237 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagacttttt 307  Q
    ||||||| ||||||||||||||| ||||||| || | |||||| || |  |||||||||||| ||||||||    
T  36721589 gactttaaatagtaagtttttatggaaatttgtgtaatcaatgcattgagaattgaaatatttgacttttt 36721659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 40071380 - 40071322
Alignment:
Q  269 tgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||||||||||  | |||||||||| |||| ||||||||||||  ||||||||||||||    
T  40071380 tgcattcaatgcgttggaaattgaagtattggactttttcaatgcataatttcttaatt 40071322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 40062382 - 40062309
Alignment:
Q  240 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataa 313  Q
    |||| ||| ||| ||||||| ||||||  ||||||||||| || ||||| |||||||||  |||||||||||||    
T  40062382 tttaaataataaatttttatagaaattcgtgcattcaatgcattggaaaatgaaatattgaactttttcaataa 40062309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 50248012 - 50247943
Alignment:
Q  245 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaa 314  Q
    ||||||||||||||| |||||| ||| |||||||| || | ||||| || ||||  ||||||||||||||    
T  50248012 atagtaagtttttatagaaattaatgaattcaatgcattgaaaatttaactatttaactttttcaataaa 50247943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 333
Target Start/End: Original strand, 23016237 - 23016321
Alignment:
Q  249 taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaat 333  Q
    |||||||||||  || | |||| |||||||| || |||||||||||| || ||||| || ||  |||||||||||||||| ||||    
T  23016237 taagtttttataaaagtctatgtattcaatgcattggaaattgaaatgtttgacttctttaaataataatttcttaatttggaat 23016321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 40480175 - 40480275
Alignment:
Q  239 ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctta 338  Q
    ||||| |||||||||||||    || |||||| | |||||| ||||| |||||||||||| |||||||| |  | ||||||||||  ||||| |||||||    
T  40480175 ctttaaatagtaagttttttaaaaagtttatgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatcctta 40480274  T
Q  339 a 339  Q
    |    
T  40480275 a 40480275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 327
Target Start/End: Complemental strand, 13585 - 13478
Alignment:
Q  220 taaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatt 319  Q
    ||||| || ||||||  ||||| |||||||| |||||||| |||| || ||||||||| | ||||||||||||| ||||||||||||||||| |||| ||    
T  13585 taagggcactctttaaagacttgagatagtaggtttttatggaaacttgtgcattcaaagcatcggaaattgaagtattagactttttcaatgaatagtt 13486  T
Q  320 tcttaatt 327  Q
    ||||||||    
T  13485 tcttaatt 13478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 32770762 - 32770863
Alignment:
Q  226 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 325  Q
    ||||||||| ||||||||||||||||  |||||| |||||||||||  |||||| ||  ||||||||| |||||   |||||||||||||||||||||||    
T  32770762 cattctttaaggactttagatagtaaaattttatggaaatttatgcggtcaatgcattcgaaattgaagtattaagttttttcaataaataatttcttaa 32770861  T
Q  326 tt 327  Q
    ||    
T  32770862 tt 32770863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 27921991 - 27921891
Alignment:
Q  240 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga-ctttttcaataaataatttcttaatttagaatcctta 338  Q
    |||||||| ||||||||||  ||||||||| ||||||||| ||   ||||||||||||||||  ||||| ||||||||||||||||||||||||| ||||    
T  27921991 tttagataataagtttttaaggaaatttatacattcaatgcatttaaaattgaaatattagaggttttttaataaataatttcttaatttagaatactta 27921892  T
Q  339 a 339  Q
    |    
T  27921891 a 27921891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 338
Target Start/End: Complemental strand, 18734473 - 18734354
Alignment:
Q  219 ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat 318  Q
    |||||| |||||| || |||||| | ||||||| |||||||  ||| || ||||||||||| ||||||||||||| | ||| ||||||| ||  ||||||    
T  18734473 ctaaggacattctctaaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgtatcggaaattgaagtgttaaacttttttaaggaataat 18734374  T
Q  319 ttcttaatttagaatcctta 338  Q
    ||||||||| |||| |||||    
T  18734373 ttcttaattgagaaacctta 18734354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 32438074 - 32438175
Alignment:
Q  226 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 325  Q
    ||||||||| |||||||| ||||||| ||||||| |||| || |||||| |||| ||||||||||||| | ||| || |||||||  |||||||| ||||    
T  32438074 cattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaaaccttttcaaataataattttttaa 32438173  T
Q  326 tt 327  Q
    ||    
T  32438174 tt 32438175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 335
Target Start/End: Original strand, 11580424 - 11580522
Alignment:
Q  237 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcc 335  Q
    ||||||||||||||||||||||| ||||  | || |||||||  |||  |||||||| |||||||||| || ||| |||||||| |||||| |||||||    
T  11580424 gactttagatagtaagtttttatggaaacatgtgtattcaatccatcaaaaattgaagtattagacttatttaatgaataattttttaattgagaatcc 11580522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 338
Target Start/End: Complemental strand, 36260541 - 36260429
Alignment:
Q  226 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 325  Q
    ||||||||  ||||||| |||||||| ||| |||  |||||| || ||| |||| ||| |||||||||  |||||||||||||||| ||||| |||||||    
T  36260541 cattctttgaggactttggatagtaaatttatataaaaatttgtgtatttaatgcatcagaaattgaagcattagactttttcaattaataacttcttaa 36260442  T
Q  326 tttagaatcctta 338  Q
     |  |||||||||    
T  36260441 atgggaatcctta 36260429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 25093909 - 25093866
Alignment:
Q  285 gaaattgaaatattagactttttcaataaataatttcttaattt 328  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  25093909 gaaattgaaatatttgacttttttaataaataatttcttaattt 25093866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 29260331 - 29260432
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 337  Q
    ||||||||||||||||||||||  || |||  ||||| |||| |||| ||||||||  ||||   ||||| ||||| || |||||||||| |||||||||    
T  29260331 actttagatagtaagtttttatgaaagtttgagcatttaatgcatcgaaaattgaaggattaagttttttaaataattattttcttaattaagaatcctt 29260430  T
Q  338 aa 339  Q
    ||    
T  29260431 aa 29260432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 29865825 - 29865877
Alignment:
Q  287 aattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||||||||| |||||||| ||  |||||||||||| ||||||||||||||    
T  29865825 aattgaaatattcgactttttaaaagaataatttcttattttagaatccttaa 29865877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 7933396 - 7933341
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaa 293  Q
    |||||| ||||||| |||||||  ||| |||||||||||||| |||||||||||||    
T  7933396 actttaaatagtaaatttttatgaaaaattatgcattcaatgcatcggaaattgaa 7933341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 11252722 - 11252781
Alignment:
Q  268 atgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||||||||||| |||| |||||||| || |||||||||||||| || | ||||||||||    
T  11252722 atgcattcaatgtatcgaaaattgaagtagtagactttttcaattaaaagtttcttaatt 11252781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 8964483 - 8964393
Alignment:
Q  249 taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||| |||||  |||||| || | |||||| || |||||||||||||||  ||||||| ||  ||||||| ||||||||||||| |||||    
T  8964483 taagtatttatgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaa 8964393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 9153486 - 9153579
Alignment:
Q  245 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||||||||| ||  |||||| || |||||||| || |||||||||| | || | |||||| ||  |||||||||||||||| ||||||||||    
T  9153486 atagtaagtttt-ataaaaatttgtgtattcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaatttggaatccttaa 9153579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 33618036 - 33617966
Alignment:
Q  245 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaat 315  Q
    |||||||| |||||| ||||| | ||||||||||| || ||||||| |||||||  ||||||| |||||||    
T  33618036 atagtaagattttatagaaatatgtgcattcaatgcattggaaattaaaatatttaactttttaaataaat 33617966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 327
Target Start/End: Original strand, 33962938 - 33963036
Alignment:
Q  229 tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||||| |||||||| ||| ||| |||||||  ||| || ||||||||||| || | |||||||| | ||| ||||||| ||  |||||||||||||||    
T  33962938 tctttaaggactttaaataataaatttttatgaaaaattgtgcattcaatgcattgaaaattgaagtgttaaacttttttaaagaataatttcttaatt 33963036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 5678476 - 5678576
Alignment:
Q  239 ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctta 338  Q
    ||||||||||||| ||||||| |||||||||  |||||||| || | |||||||| ||||| ||||||| ||| ||||||||||||| |  |||||||||    
T  5678476 ctttagatagtaaatttttatagaaatttatatattcaatgtattgaaaattgaagtattaaacttttttaatgaataatttcttaactatgaatcctta 5678575  T
Q  339 a 339  Q
    |    
T  5678576 a 5678576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 10570928 - 10571047
Alignment:
Q  220 taaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatt 319  Q
    ||||| || ||||||  |||||||  |||||| ||||||| ||||||| | ||||||||| |||  |||||||| ||||  || |||||||| |||| ||    
T  10570928 taaggacactctttaaagactttatttagtaaatttttatagaaatttgttcattcaatgcatcaaaaattgaagtattgaacattttcaatgaatagtt 10571027  T
Q  320 tcttaatttagaatccttaa 339  Q
    |||||||| |||||||||||    
T  10571028 tcttaattaagaatccttaa 10571047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 6586428 - 6586522
Alignment:
Q  245 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||||| |||||||  |||||||||  ||||||| ||||||||||||| |||  |||||||||||  | ||||||| |||||||| || |||||    
T  6586428 atagtaactttttatgaaaatttatgttttcaatgcatcggaaattgaactatctgactttttcaaagattaatttcctaatttagtatgcttaa 6586522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 1252818 - 1252754
Alignment:
Q  242 tagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttt 306  Q
    |||||| |||||||||||  ||||| |||||||||||| |||  |||||||| ||||||||||||    
T  1252818 tagatattaagtttttatcaaaattaatgcattcaatgcatcataaattgaagtattagactttt 1252754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 1243437 - 1243372
Alignment:
Q  241 ttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttt 306  Q
    ||||||| ||||||||||   |||||||||||||||||| |||  |||||||| ||||||| ||||    
T  1243437 ttagatattaagtttttaccaaaatttatgcattcaatgcatcttaaattgaagtattagattttt 1243372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 7465555 - 7465510
Alignment:
Q  262 aaatttatgcattcaatggatcggaaattgaaatattagacttttt 307  Q
    ||||||||| | |||||| |||||||||||||||||| ||||||||    
T  7465555 aaatttatgtaatcaatgcatcggaaattgaaatatttgacttttt 7465510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 339
Target Start/End: Complemental strand, 6771958 - 6771838
Alignment:
Q  219 ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat 318  Q
    |||||| || |||||| |||||||| ||||||| ||||||| |||| || ||||||||||  |||||||||||||||  |    ||||||||  ||||||    
T  6771958 ctaaggacactctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatatatcggaaattgaaatggtgagttttttcaaagaataat 6771859  T
Q  319 ttcttaatttagaatccttaa 339  Q
    ||||||||| |||| ||||||    
T  6771858 ttcttaattgagaaaccttaa 6771838  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 3298329 - 3298231
Alignment:
Q  229 tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||||| | |||||||||  ||| ||||||| |||| ||| |||||||||| ||| ||||||||||||| |  |||||||||| |||| ||||||||||    
T  3298329 tctttaagaactttagatgttaaatttttatggaaacttaagcattcaatgcatcagaaattgaaatatgaagctttttcaatgaatagtttcttaatt 3298231  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 44319819 - 44319948
Alignment:
Q  198 tggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatat 297  Q
    ||||||||||||| |||| |||| ||  |||| |||| |||||||| ||| ||| ||||||| | || || |||||| |||| |||| ||||| || | |    
T  44319819 tggaaaatgttaacgagtattcttagagcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgt 44319918  T
Q  298 tagactttttcaataaataatttcttaatt 327  Q
    || ||||||| || ||||||||||||||||    
T  44319919 taaactttttaaaaaaataatttcttaatt 44319948  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 36061530 - 36061607
Alignment:
Q  262 aaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||| || |||||||| || |||||| | | |||| |||||||| |||||||||||||||  ||||||||||||||    
T  36061530 aaatttgtgtattcaatgcattggaaatagtagtatttgacttttttaataaataatttcttgctttagaatccttaa 36061607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 39170380 - 39170331
Alignment:
Q  285 gaaattgaaatattagactttttcaataaataatttcttaatttagaatc 334  Q
    |||||||||| |||| ||||||| ||||||||||||||||||||| ||||    
T  39170380 gaaattgaaacattaaactttttgaataaataatttcttaatttacaatc 39170331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 24557833 - 24557734
Alignment:
Q  240 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattta-gaatcctta 338  Q
    |||||| ||||||||||| |  |||||  ||||| ||||| || | |||||||| ||||||||||||| |||||||||||| |||||| | |||||||||    
T  24557833 tttagaaagtaagtttttgtgtaaattg-tgcatacaatgtattgaaaattgaagtattagacttttttaataaataattttttaattgaggaatcctta 24557735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 31902744 - 31902839
Alignment:
Q  229 tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctta 324  Q
    |||||| |||||||| ||||||| ||||||| |||| || || | |||||| || | ||||||||||||| |||||| | ||  ||||||||||||    
T  31902744 tctttaaggactttaaatagtaaatttttatggaaaattgtgtagtcaatgtattgaaaattgaaatatttgactttcttaaggaataatttctta 31902839  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 34681787 - 34681693
Alignment:
Q  245 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||||| |||||||  ||| || || ||| |||| || |||||||||| |||| |||||||  || |||||||||| ||||||||||| |||||    
T  34681787 atagtaactttttataaaaacttgtgtatttaatgcattggaaattgaactatttgacttttgtaaaaaataatttcctaatttagaatgcttaa 34681693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 6707980 - 6707891
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    |||||| ||| |||| |||||| ||||||||| |||||| || |||  ||||||||||||||   |||| |||| || ||||||||||||    
T  6707980 actttacataataagattttatagaaatttatacattcagtgtatcaaaaattgaaatattaagtttttccaatgaacaatttcttaatt 6707891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 17883317 - 17883418
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 337  Q
    |||||| ||||||||||||| |  ||||||||| | ||||||  | ||||||| || | || |||||||| || |||||||||||| ||| | |||||||    
T  17883317 actttaaatagtaagtttttgtcaaaatttatgaaatcaatgcgttggaaattaaagtttttgacttttttaaaaaataatttctttattaaaaatcctt 17883416  T
Q  338 aa 339  Q
    ||    
T  17883417 aa 17883418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 22739463 - 22739540
Alignment:
Q  262 aaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||| | ||||||||| |||| |||||||  ||| |||  |||| ||||||||||||||||||| | |||||||||    
T  22739463 aaatttgtacattcaatgcatcgaaaattgatgtatcagatatttttaataaataatttcttaattgaaaatccttaa 22739540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 26402786 - 26402887
Alignment:
Q  238 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 337  Q
    |||||| ||||||||||||| |  ||||||||| | |||||| || | |||||||| | || |||||||| ||  ||||||||||| |||  ||||||||    
T  26402786 actttaaatagtaagtttttgtcaaaatttatgaaatcaatgtattgaaaattgaagtttttgacttttttaaggaataatttctttattaggaatcctt 26402885  T
Q  338 aa 339  Q
    ||    
T  26402886 aa 26402887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 41898352 - 41898255
Alignment:
Q  242 tagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    |||||| ||| || |||| |||| || | |||| |||| ||||||||||||| ||||  ||||||||||| || | |||||||||| | |||||||||    
T  41898352 tagataataaattgttatggaaacttgtacatttaatgcatcggaaattgaattattgaactttttcaatgaaaagtttcttaattgaaaatccttaa 41898255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 2699317 - 2699270
Alignment:
Q  280 gatcggaaattgaaatattagac-tttttcaataaataatttcttaatt 327  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||||    
T  2699317 gatcggaaattgaaatattaaacatttttcaa-aaataatttcttaatt 2699270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 5495991 - 5496075
Alignment:
Q  255 tttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 339  Q
    ||||| |||| || ||||||||||| |||| ||||| || | ||| || |||||||  ||||||||||||||| |||| ||||||    
T  5495991 tttatggaaagttgtgcattcaatgcatcgaaaattaaagtgttaaacattttcaaggaataatttcttaattgagaaaccttaa 5496075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 6775331 - 6775232
Alignment:
Q  240 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaata-ttagactttttcaataaataatttcttaatttagaatcctta 338  Q
    |||| ||||||| | ||||| |||| || ||||||||||| |||||||||| ||||| | ||| ||||||||  |||||||| |||||| |||| |||||    
T  6775331 tttaaatagtaaatatttatggaaaattgtgcattcaatgcatcggaaattcaaatagtgaga-tttttcaaagaataatttattaattgagaaacctta 6775233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 7873508 - 7873536
Alignment:
Q  413 aggcttaattgcagttttgaccccctatg 441  Q
    |||||||||||||||||||||||||||||    
T  7873508 aggcttaattgcagttttgaccccctatg 7873536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 38452236 - 38452188
Alignment:
Q  275 caatggatcggaaattgaaatattagactttttcaataaataatttctt 323  Q
    ||||| |||||||||||||||||| |||||||| |  ||||||||||||    
T  38452236 caatgcatcggaaattgaaatatttgacttttttataaaataatttctt 38452188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 5015 - 5097
Alignment:
Q  245 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 327  Q
    ||||||| ||||||| |||| |||||||||||||| || |||||||||||| ||| ||||||| ||  |||||||| ||||||    
T  5015 atagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaatt 5097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 122457 - 122563
Alignment:
Q  226 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 325  Q
    ||||||||| ||| ||||  |||||| ||||||| |||| || |||||| |||| |||||||||| || | ||| ||||||||||  |||||||||||||    
T  122457 cattctttaaggattttaagtagtaattttttatggaaaattgtgcatttaatgcatcggaaattaaagtgttaaactttttcaaagaataatttcttaa 122556  T
Q  326 tttagaa 332  Q
    || ||||    
T  122557 ttgagaa 122563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 25585 - 25640
Alignment:
Q  261 gaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaata 316  Q
    ||||||| | |||||| || |||| |||||||||||||||||| ||||||||||||    
T  25585 gaaatttgtacattcactgcatcgaaaattgaaatattagactctttcaataaata 25640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 18114 - 18214
Alignment:
Q  239 ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctta 338  Q
    ||||| |||||||||||||    || |||||| | |||||| ||||| |||||||||||| |||||||| |  | ||||||||||  ||||| |||||||    
T  18114 ctttaaatagtaagttttttaaaaagtttatgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatcctta 18213  T
Q  339 a 339  Q
    |    
T  18214 a 18214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 439
Target Start/End: Original strand, 201304 - 201332
Alignment:
Q  411 taaggcttaattgcagttttgacccccta 439  Q
    |||||||||||||||||||||||||||||    
T  201304 taaggcttaattgcagttttgacccccta 201332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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