View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_low_57 (Length: 434)

Name: NF1390_low_57
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_low_57
NF1390_low_57
[»] chr6 (6 HSPs)
chr6 (71-408)||(5914941-5915278)
chr6 (319-394)||(5924285-5924359)
chr6 (200-277)||(17008361-17008438)
chr6 (100-159)||(5924228-5924287)
chr6 (200-277)||(33603688-33603765)
chr6 (74-117)||(5923775-5923818)
[»] chr8 (3 HSPs)
chr8 (200-321)||(24574555-24574676)
chr8 (200-298)||(27519151-27519249)
chr8 (218-277)||(1770446-1770505)
[»] chr5 (2 HSPs)
chr5 (167-249)||(1296587-1296669)
chr5 (200-298)||(4574792-4574890)
[»] chr1 (2 HSPs)
chr1 (200-319)||(2534711-2534830)
chr1 (200-277)||(29426694-29426771)
[»] chr7 (2 HSPs)
chr7 (200-321)||(5654250-5654371)
chr7 (200-319)||(31219320-31219439)
[»] chr2 (3 HSPs)
chr2 (200-279)||(5279237-5279316)
chr2 (200-277)||(202329-202406)
chr2 (167-261)||(8587103-8587196)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 71 - 408
Target Start/End: Original strand, 5914941 - 5915278
Alignment:
Q  71 tcgaataatattacggttatgattgattgacaatgtaaaatatgtttacgctacaaatgcgtgccaattgaatccatgttctcaattaagtacccatttg 170  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  5914941 tcgaataatatcacggttataattgattgacaatgtaaaatatgtttacgctacaaatgcctgtcaattgaatccatgttctcaattaagtacccatttg 5915040  T
Q  171 aaatcacggtgaaaaccacacccaccgttgttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagt 270  Q
    |||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5915041 aaatcacggtgaaaaccacatccaccattgttttggctaacgttccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagt 5915140  T
Q  271 gcattgggacgcagtttccagcttccaaccgcgtttcaaaacacacactaaattgacttgtgaaataatttgatattcatattttttatgtctataatgt 370  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5915141 gcattgggacgcagtttccagcttccaactgcgtttcaaaacacacactaaattgacttgtgaaataatttgatattcatattttttatgtctataatgt 5915240  T
Q  371 tgtaggtgtgatgcaaaaggatgatctcatcaattttt 408  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5915241 tgtaggtgtgatgcaaaaggatgatctcatcaattttt 5915278  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 319 - 394
Target Start/End: Original strand, 5924285 - 5924359
Alignment:
Q  319 taaattgacttgtgaaataatttgatattcatattttttatgtctataatgttgtaggtgtgatgcaaaaggatga 394  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  5924285 taaattgacttgtgaaataatttgatattcata-tttttatgtctataatgttgtaggtgtgatgcaaaaagatga 5924359  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 17008438 - 17008361
Alignment:
Q  200 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgg 277  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||    |||||||||||||||    
T  17008438 gttttggctaaagctccaaattggagcttctactttttcacgttttttatgcattgggaagtgtgaatagtgcattgg 17008361  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 5924228 - 5924287
Alignment:
Q  100 acaatgtaaaatatgtttacgctacaaatgcgtgccaattgaatccatgttctcaattaa 159  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||    
T  5924228 acaatgtaaaatatgtttacgctgcaaatacgtgccaattaaatccatgttgtcaattaa 5924287  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 33603765 - 33603688
Alignment:
Q  200 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgg 277  Q
    |||||||| || ||||||||||||||||||||| |||||| |||||||| ||||||| |    |||||||||||||||    
T  33603765 gttttggctaaagctccaaattggagcttctaccttttcatattttttatgcattggaaagtgtgaatagtgcattgg 33603688  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 5923775 - 5923818
Alignment:
Q  74 aataatattacggttatgattgattgacaatgtaaaatatgttt 117  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||    
T  5923775 aataatataacggttatgactgattaacaatgtaaaatatgttt 5923818  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 200 - 321
Target Start/End: Complemental strand, 24574676 - 24574555
Alignment:
Q  200 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaac 299  Q
    |||||||| || ||||||||||| ||||||||||||||||| |||||||||||| || |  | |||||||||||||| || |||||||| |||||||||     
T  24574676 gttttggctaatgctccaaattgaagcttctactttttcacgttttttaagcatcggaaatcgtgaatagtgcattgtgaagcagtttctagcttccaaa 24574577  T
Q  300 cgcgtttcaaaacacacactaa 321  Q
    ||| || | |||||||||||||    
T  24574576 cgctttcccaaacacacactaa 24574555  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 298
Target Start/End: Original strand, 27519151 - 27519249
Alignment:
Q  200 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaa 298  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||||| |  ||||||||||||||||| |  ||||| |||||||||    
T  27519151 gttttggctaaagctccaaattggagcttctactttttcacgttttttatgcattgggaaatgtgaatagtgcattgggaagtggtttctagcttccaa 27519249  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 1770446 - 1770505
Alignment:
Q  218 aattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgg 277  Q
    ||||||||||||||| ||||||| ||||||| ||||||||| | ||||||||||||||||    
T  1770446 aattggagcttctaccttttcacgttttttatgcattgggaaatatgaatagtgcattgg 1770505  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 1296587 - 1296669
Alignment:
Q  167 tttgaaatcacggtgaaaaccacacccaccgttgttttggccaacgctccaaattggagcttctactttttcacattttttaa 249  Q
    |||| ||||| ||||||||||||| |||||| | ||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  1296587 tttggaatcagggtgaaaaccacaaccaccgcttttttggccaacgctctaaattgaagcttctactttttcatattttttaa 1296669  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 298
Target Start/End: Original strand, 4574792 - 4574890
Alignment:
Q  200 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaa 298  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||    ||||||||||||||| | |  ||||| |||||||||    
T  4574792 gttttggctaaagctccaaattggagcttctactttttcacgttttttatgcattgggaagtgtgaatagtgcattggaaagttgtttctagcttccaa 4574890  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 2534711 - 2534830
Alignment:
Q  200 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaac 299  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||    ||||||||||||||||| |  ||||  |||||||||     
T  2534711 gttttggctaaagctccaaattggagcttttactttttcacattttttatgcattgggaagtgtgaatagtgcattgggaagtggtttatagcttccaaa 2534810  T
Q  300 cgcgtttcaaaacacacact 319  Q
     || || | |||||||||||    
T  2534811 agccttcccaaacacacact 2534830  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 29426771 - 29426694
Alignment:
Q  200 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgg 277  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||    |||||||||||||||    
T  29426771 gttttggctaaagctccaaattggagcttctactttttcacgttttttatgcattgggaagtgtgaatagtgcattgg 29426694  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 321
Target Start/End: Complemental strand, 5654371 - 5654250
Alignment:
Q  200 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaac 299  Q
    |||||||| || | ||||||||||||||||||||||||||  ||||||| |||||||||    ||||||||||||||||| |  ||||| |||||||||     
T  5654371 gttttggctaaagttccaaattggagcttctactttttcatgttttttatgcattgggaagtgtgaatagtgcattgggaagtggtttctagcttccaaa 5654272  T
Q  300 cgcgtttcaaaacacacactaa 321  Q
     || || | |||||||||||||    
T  5654271 agccttcccaaacacacactaa 5654250  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 31219320 - 31219439
Alignment:
Q  200 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaac 299  Q
    |||||||| || |||||||||| |||||||||||||||||  ||||||| |||||||||    ||||||||||||||||| |  ||||| |||||||||     
T  31219320 gttttggctaaagctccaaattagagcttctactttttcatgttttttatgcattgggaagtgtgaatagtgcattgggaagtggtttctagcttccaaa 31219419  T
Q  300 cgcgtttcaaaacacacact 319  Q
     || || | |||||||||||    
T  31219420 agccttcccaaacacacact 31219439  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 5279316 - 5279237
Alignment:
Q  200 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattggga 279  Q
    |||||||| || |||| |||||||||||||||||||||||  ||||||| |||||||||    |||||||||||||||||    
T  5279316 gttttggctaaagctctaaattggagcttctactttttcatgttttttatgcattgggaagtgtgaatagtgcattggga 5279237  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 202406 - 202329
Alignment:
Q  200 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgg 277  Q
    |||||||| || ||||||||||||||||||||||||||||  ||||||| ||||||| |    |||||||||||||||    
T  202406 gttttggctaaagctccaaattggagcttctactttttcatgttttttatgcattggaaagtgtgaatagtgcattgg 202329  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 8587103 - 8587196
Alignment:
Q  167 tttgaaatcacggtgaaaaccacacccaccgttgttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacac 261  Q
    |||| ||||||  |||| |||||||||||||||  |||||| || | |||||||| |||||||||| ||||||  ||||||||| || |||||||    
T  8587103 tttggaatcacaatgaataccacacccaccgtt-atttggctaatgttccaaattagagcttctacgttttcaagttttttaagaatcgggacac 8587196  T

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