View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_58 (Length: 433)
Name: NF1390_low_58
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 424
Target Start/End: Original strand, 44626896 - 44627304
Alignment:
| Q |
30 |
gttattgcctgtaacatggtactctcaattttattaacatgcatatcaagaaatatg----acagctctaaaatttaatt---------gcaaggatcaa |
116 |
Q |
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| T |
44626896 |
gttattgcctgtaacatggtactctcaattttattaacatgcat--caagaaatatgtatgactcctctaaaatttaattttgtattttgcaaggatcaa |
44626993 |
T |
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| Q |
117 |
tactacttactgttggtggacggcaacttgtcccctgaaaaagggaagnnnnnnnntcataaaaatgatgcaagtatatat----tactataaaaagtat |
212 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| |
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| T |
44626994 |
tattacttactgttggtggacggcaacttgtcccctgaaaaagggaagaaaaaaaatcataaaaatgatgcaagtatatatatattactataaaagatat |
44627093 |
T |
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| Q |
213 |
atatagtgtattatttaagtaacacaagttgaaatgttattaagttnnnnnnnnctatagtacttacgggtggtggatttcctatgcaaggttgtttcca |
312 |
Q |
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| T |
44627094 |
atatagtgtattatttaagtaacaaaagttgaaatgttattaagttaaaaaaa-ctatagtacttacgggtggtggatttcctatgcaaggttgtttcca |
44627192 |
T |
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| Q |
313 |
ccacatagagcctcgaccatcaacagtcccttttccacttataattaaaccattcacaaatgagaaaccaatccatgtgtttataggggatcctgaatat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44627193 |
ccacatagagcctcgaccatcaacagtcccttttccacttataattaaaccattcacaaatgagaaaccaatccatgtgtttataggggatcctgaatat |
44627292 |
T |
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| Q |
413 |
tccgatattgtt |
424 |
Q |
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|||||| ||||| |
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| T |
44627293 |
tccgattttgtt |
44627304 |
T |
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