View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_low_59 (Length: 432)
Name: NF1390_low_59
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_59 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 93 - 362
Target Start/End: Original strand, 31856714 - 31856988
Alignment:
| Q |
93 |
ccattccccttagaatcggagtttaacacacaaaaaacttcaaaatttgagatcgattatattttccgtatctaatttctatccttaattcaatttgtta |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||| | ||||||||||||||| |||||||||| |||| |
|
|
| T |
31856714 |
ccattccccttagaatcggagtttaacacataaaaa--ttcaaaatttgagatcaattgtatttcctgtatctaatttctatagttaattcaatctgttc |
31856811 |
T |
|
| Q |
193 |
tggtagtgaatataat-------cttaacacagttcaatatttctaattgcaggcagggaggggttaactgcagaggaaactctaagcataggaagttat |
285 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
31856812 |
cagtagtgaatataattaaaactcttaacataattcaatatttctaattgcaggcagggagggattgactgcagaggaaactctaagcataggaagttat |
31856911 |
T |
|
| Q |
286 |
aatgcattgttgaaaagttctctgccagaagatttcaagccatacaagtcaaatgaagagacttttgattcatctca |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31856912 |
aatgcattgttgaaaagttctctgccagaagatttcaagccatacaagtcaaatgaagagacttttgaatcatctca |
31856988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 31816587 - 31816462
Alignment:
| Q |
237 |
aggcagggaggggttaactgcagaggaaactctaagcataggaagttataatgcattgttgaaaagttctctgccagaagatttcaagccatacaagtca |
336 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
31816587 |
aggcagggatggattaactgcagaggaaactctaagcttaggaagttacaacgcattgttgaaaagttctctaccagaaaatttcaagccatacaagtca |
31816488 |
T |
|
| Q |
337 |
aatgaagagacttttgattcatctca |
362 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
31816487 |
aatgaagagacttttgaatcatctca |
31816462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 11383 times since January 2019
Visitors: 8091