View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_low_61 (Length: 421)

Name: NF1390_low_61
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_low_61
NF1390_low_61
[»] chr3 (9 HSPs)
chr3 (55-308)||(8070888-8071141)
chr3 (134-381)||(8039555-8039812)
chr3 (301-411)||(8069494-8069604)
chr3 (132-169)||(5407212-5407249)
chr3 (134-182)||(28812597-28812645)
chr3 (132-182)||(7171570-7171620)
chr3 (131-169)||(25775575-25775613)
chr3 (132-169)||(15999963-16000000)
chr3 (133-169)||(1389908-1389944)
[»] scaffold0331 (1 HSPs)
scaffold0331 (6-60)||(1654-1708)
[»] chr1 (6 HSPs)
chr1 (132-174)||(16164252-16164294)
chr1 (133-169)||(6612113-6612149)
chr1 (132-182)||(9690213-9690263)
chr1 (132-180)||(1486646-1486694)
chr1 (133-169)||(16297234-16297270)
chr1 (132-184)||(18190046-18190098)
[»] scaffold0022 (1 HSPs)
scaffold0022 (132-183)||(90912-90963)
[»] chr8 (5 HSPs)
chr8 (132-182)||(8343396-8343446)
chr8 (132-182)||(36450694-36450744)
chr8 (133-182)||(8343037-8343086)
chr8 (138-182)||(13436910-13436954)
chr8 (134-162)||(31557067-31557095)
[»] chr4 (5 HSPs)
chr4 (132-169)||(30982820-30982857)
chr4 (134-182)||(17876237-17876285)
chr4 (132-175)||(35952568-35952611)
chr4 (132-184)||(23292924-23292976)
chr4 (134-182)||(47264068-47264116)
[»] chr6 (5 HSPs)
chr6 (131-182)||(9027235-9027286)
chr6 (132-183)||(24645550-24645601)
chr6 (85-129)||(10760884-10760928)
chr6 (133-169)||(21395266-21395302)
chr6 (132-160)||(34172257-34172285)
[»] chr2 (1 HSPs)
chr2 (95-130)||(10547972-10548007)
[»] chr7 (3 HSPs)
chr7 (132-174)||(3294252-3294294)
chr7 (132-182)||(9778574-9778624)
chr7 (138-182)||(5307331-5307375)
[»] chr5 (2 HSPs)
chr5 (132-182)||(21522830-21522880)
chr5 (132-182)||(21533396-21533446)
[»] scaffold0020 (1 HSPs)
scaffold0020 (131-159)||(135286-135314)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 55 - 308
Target Start/End: Complemental strand, 8071141 - 8070888
Alignment:
Q  55 agaagagttgtacaataaaaatgatatgcaatctatgaaccacggacactgacacgtcgacgccgttaataatttatcgtgtccgacaccaggacacgcc 154  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  8071141 agaagagttgtacaataaaaatgatgtgcaatctatgaaccacggacactgatacgtcgacaccgttaataatttatcgtgtccgacaccaggacacgcc 8071042  T
Q  155 taatccaaagagtgtatgtgcctcatagtgtgcaattaaataacatcatttattataatataagactatcaataaaggtttcctattgaaaaacctatta 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8071041 taatccaaagagtgtatgtgcctcatagtgtgcaattaaataacatcatttatcataatctaagactatcaataaaggtttcctattgaaaaacctatta 8070942  T
Q  255 aggtactcttcatgtgtcatgttcttgtatacttgctggtttccttcaccaatt 308  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8070941 aagtactcttcatgtgtcatgttcttgtatacttgctggtttccttcaccaatt 8070888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 134 - 381
Target Start/End: Complemental strand, 8039812 - 8039555
Alignment:
Q  134 tgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagtgtgcaattaaataacatcatttattataatataagactatcaataaaggt 233  Q
    ||||||||||| |||||||| |||||| |||||| | ||||| |||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||     
T  8039812 tgtccgacaccgggacacgcttaatccgaagagtatctgtgcttcatagtgtgcaattaaacaacatcatttatcataatctaatactatcaataaagga 8039713  T
Q  234 ttc----------ctattgaaaaacctattaaggtactcttcatgtgtcatgttcttgtatacttgctggtttccttcaccaattaacttcttagcaggt 323  Q
    |||          ||||||||||| |||| ||  |||||  ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||    
T  8039712 ttcatcaagcttcctattgaaaaatctatcaaaatactcagcatgtgtcatgttcttgtatacttgttggtttccttcaacaattaatttcttagcaggt 8039613  T
Q  324 gcaatgtcaatagaaggggttggataacaaaatgttactattgtcaatctttccttca 381  Q
    |||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  8039612 gcaatgtccatagaagggcttggatagcaaaatgtcactattgtcaatctttccttca 8039555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 301 - 411
Target Start/End: Complemental strand, 8069604 - 8069494
Alignment:
Q  301 caccaattaacttcttagcaggtgcaatgtcaatagaaggggttggataacaaaatgttactattgtcaatctttccttcaaggcttcaacttatttact 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8069604 caccaattaacttcttagcaggtgcaatgtcaatagaaggggttggataacaaaatgttactattgtcaatctttccttcaaggcttcaacttatttact 8069505  T
Q  401 acagctctgtg 411  Q
    |||||||||||    
T  8069504 acagctctgtg 8069494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 5407249 - 5407212
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgt 169  Q
    |||||||||| |||||||||||||||||||||||||||    
T  5407249 cgtgtccgacgccaggacacgcctaatccaaagagtgt 5407212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 28812597 - 28812645
Alignment:
Q  134 tgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    ||||||||| ||||||||||||||||| | |||||| ||||||||||||    
T  28812597 tgtccgacagcaggacacgcctaatccgaggagtgtctgtgcctcatag 28812645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 7171570 - 7171620
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    |||||||||||||  |||||||||||||||| |||||||| ||| ||||||    
T  7171570 cgtgtccgacaccgcgacacgcctaatccaaggagtgtatatgcttcatag 7171620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 25775575 - 25775613
Alignment:
Q  131 tcgtgtccgacaccaggacacgcctaatccaaagagtgt 169  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  25775575 tcgtgtccgacaccaggacacgcctaatccgaggagtgt 25775613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 16000000 - 15999963
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgt 169  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  16000000 cgtgtccgacaccgggacacgcctaatccaaggagtgt 15999963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 1389908 - 1389944
Alignment:
Q  133 gtgtccgacaccaggacacgcctaatccaaagagtgt 169  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  1389908 gtgtccgacaccaggacatgcctaatccaaggagtgt 1389944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0331 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 1708 - 1654
Alignment:
Q  6 agaaggttacatcacttaaataatgagaagacgaagatgataaagaagtagaaga 60  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  1708 agaaggttacatcacttagataatgagaagacgaagatgttaaagaagtagaaga 1654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 16164294 - 16164252
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtg 174  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  16164294 cgtgtccgacaccaggacacgcctaatccgaagagtgtatgtg 16164252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 6612149 - 6612113
Alignment:
Q  133 gtgtccgacaccaggacacgcctaatccaaagagtgt 169  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6612149 gtgtccgacaccaggacacgcctaatccaaggagtgt 6612113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 9690263 - 9690213
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    ||||||||||||| |||||||||||||||  ||||||| ||||| ||||||    
T  9690263 cgtgtccgacaccgggacacgcctaatccggagagtgtttgtgcttcatag 9690213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 1486694 - 1486646
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcat 180  Q
    ||||||||||||| ||||||||||||||| | |||||| ||||| ||||    
T  1486694 cgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 16297270 - 16297234
Alignment:
Q  133 gtgtccgacaccaggacacgcctaatccaaagagtgt 169  Q
    |||||||||||||||||||||||||||| | ||||||    
T  16297270 gtgtccgacaccaggacacgcctaatccgaggagtgt 16297234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 18190098 - 18190046
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagtg 184  Q
    ||||||||||||| |||||| |||||||| | ||||||||| || ||||||||    
T  18190098 cgtgtccgacaccgggacacacctaatccgaggagtgtatgcgcttcatagtg 18190046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 90912 - 90963
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagt 183  Q
    ||||||||||||||  ||||||||||||||| |||||||||||| |||||||    
T  90912 cgtgtccgacaccaaaacacgcctaatccaatgagtgtatgtgcttcatagt 90963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 8343396 - 8343446
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||| ||||||    
T  8343396 cgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 36450744 - 36450694
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    ||||||||||||||||||||||||||||| | |||||| ||||| ||||||    
T  36450744 cgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 8343037 - 8343086
Alignment:
Q  133 gtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    |||||||||||| ||||||||||||||| |||||||| ||||| ||||||    
T  8343037 gtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 13436954 - 13436910
Alignment:
Q  138 cgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    ||||||| ||||||||||||||||| |||||| ||||| ||||||    
T  13436954 cgacaccgggacacgcctaatccaaggagtgtctgtgcttcatag 13436910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 31557067 - 31557095
Alignment:
Q  134 tgtccgacaccaggacacgcctaatccaa 162  Q
    |||||||||||||||||||||||||||||    
T  31557067 tgtccgacaccaggacacgcctaatccaa 31557095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 30982857 - 30982820
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgt 169  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  30982857 cgtgtccgacaccgggacacgcctaatccaaagagtgt 30982820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 17876237 - 17876285
Alignment:
Q  134 tgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    |||||||||||||||||| |||||||||| |||||| ||||| ||||||    
T  17876237 tgtccgacaccaggacacacctaatccaaggagtgtctgtgcttcatag 17876285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 35952611 - 35952568
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgc 175  Q
    |||||||||||||| |||||| ||||||||| ||||||||||||    
T  35952611 cgtgtccgacaccaagacacgtctaatccaatgagtgtatgtgc 35952568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 23292976 - 23292924
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagtg 184  Q
    ||||||||||||| ||||||||||||||| | ||||||  |||| ||||||||    
T  23292976 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagtg 23292924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 47264068 - 47264116
Alignment:
Q  134 tgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    |||| |||||||||||||||||||||| ||||| || ||||| ||||||    
T  47264068 tgtctgacaccaggacacgcctaatccgaagagcgtctgtgcttcatag 47264116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 9027235 - 9027286
Alignment:
Q  131 tcgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    |||||||||||||| ||||||| ||||||||| |||||| ||||| ||||||    
T  9027235 tcgtgtccgacaccgggacacggctaatccaaggagtgtttgtgcttcatag 9027286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 24645550 - 24645601
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagt 183  Q
    |||||||||||||| |||||| ||||||| |||||||| ||||| |||||||    
T  24645550 cgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcatagt 24645601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 10760928 - 10760884
Alignment:
Q  85 atctatgaaccacggacactgacacgtcgacgccgttaataattt 129  Q
    ||||||||| ||||||||||||||||||||| | | |||||||||    
T  10760928 atctatgaagcacggacactgacacgtcgacactgataataattt 10760884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 21395302 - 21395266
Alignment:
Q  133 gtgtccgacaccaggacacgcctaatccaaagagtgt 169  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  21395302 gtgtcggacaccaggacacgcctaatccaaggagtgt 21395266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 34172257 - 34172285
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatcc 160  Q
    |||||||||||||||||||||||||||||    
T  34172257 cgtgtccgacaccaggacacgcctaatcc 34172285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 10548007 - 10547972
Alignment:
Q  95 cacggacactgacacgtcgacgccgttaataattta 130  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10548007 cacggacactgacacgtcgacaccgttaataattta 10547972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 3294294 - 3294252
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtg 174  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||    
T  3294294 cgtgtccaacaccgggacacgcctaatccgaagagtgtatgtg 3294252  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 9778574 - 9778624
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    ||||||||||||| ||||||||||||||||| ||||||  |||| ||||||    
T  9778574 cgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcatag 9778624  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 5307331 - 5307375
Alignment:
Q  138 cgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    |||||| |||||||||||||||||| ||||||| |||| ||||||    
T  5307331 cgacactaggacacgcctaatccaaggagtgtacgtgcttcatag 5307375  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 21522830 - 21522880
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    |||||||| |||| ||||||||||||||||||||||||  |||| ||||||    
T  21522830 cgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21522880  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 21533396 - 21533446
Alignment:
Q  132 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 182  Q
    |||||||| |||| ||||||||||||||||||||||||  |||| ||||||    
T  21533396 cgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21533446  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 159
Target Start/End: Complemental strand, 135314 - 135286
Alignment:
Q  131 tcgtgtccgacaccaggacacgcctaatc 159  Q
    |||||||||||||||||||||||||||||    
T  135314 tcgtgtccgacaccaggacacgcctaatc 135286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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