View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_low_62 (Length: 417)
Name: NF1390_low_62
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_62 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 101 - 406
Target Start/End: Original strand, 32686400 - 32686705
Alignment:
| Q |
101 |
atacactagactcacagactgacatgttaaccaccttcgagagatatgtactagaaacccaataaactacaaatgagacttacagaaccgtaataaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32686400 |
atacactagactcacagactgacatgttaaccaccttcgagagatatgtactagaaacccaataaactacaaatgagacttacagaaccgtaataaattc |
32686499 |
T |
|
| Q |
201 |
cattaccagatgatattaatggtgaaaagtgaaaacaatagagcagtaggctcctaaaacagtataccaatgtaccctaactaattatttctaagaagac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32686500 |
cattaccagatgatattaatggtgaaaagtgaaaacaatagagcagtaggctcctaaaacagtataccaatgtaccctaactaattatttctaagaagac |
32686599 |
T |
|
| Q |
301 |
atcagtcccaccaaggccaaagccttaccaccattacccaattcttttccaactcacattgaccctcgcctctccaatatattgaaataattcctcctct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32686600 |
atcagtcccaccaaggccaaagccttaccaccattacccaattcttttccaactcacattgaccctcgcctctccaatatattgaaataattcctcctct |
32686699 |
T |
|
| Q |
401 |
ctctct |
406 |
Q |
| |
|
|||||| |
|
|
| T |
32686700 |
ctctct |
32686705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 16039 times since January 2019
Visitors: 3757