View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_64 (Length: 414)
Name: NF1390_low_64
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 30 - 402
Target Start/End: Original strand, 41657216 - 41657594
Alignment:
| Q |
30 |
gatcacaatttaaaacacaaaaatggattccttaaagtaagtgcattggtggccattagattcaattcaaacaattcaaatatacgcatattatgnnnnn |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41657216 |
gatcacaatttaaaacacaaaaatggattccttaaagtaagtgcattggtggccattagattcagttcaaacaattcaaatatacgcatattatgttttt |
41657315 |
T |
|
| Q |
130 |
nnnaatccaaattacatagattaaatctaaattgtcacccatgttttaactacttaaatttagggtgtgcacttttgttgttta---agatgttttttgt |
226 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41657316 |
tttaatccaaattacatagatcaaatctaaattgtcacccatgttttaactacttaaatttagggtgtgcacttttgttgtttattaagatgttttttgt |
41657415 |
T |
|
| Q |
227 |
tccaaactgtcaatcatgccaaagtgaaacatgacttatatttcttacattttcatattggcaaactgatgccaaattttgggttctcattacgccaac- |
325 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41657416 |
tccaatctgtcaatcatgccaaagtgaaacatgacttatatttcttacattttcatattggcaaactgatgccaaattttgggttctcattacgccaact |
41657515 |
T |
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| Q |
326 |
--tttgtatgttatcgtcattctattattgttttaattgtaacaaacaaataatcaagatgactcctgcatattatatt |
402 |
Q |
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| T |
41657516 |
aatttgtatgttaccgtcattctattattgttttaattgtaacaaacacataatcaagatgactcctgcatattatatt |
41657594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 41651341 - 41651439
Alignment:
| Q |
236 |
tcaatcatgccaaagtgaaacatgacttatatttcttacattttcatattggcaaactgatgccaaattttgggttctcattacgccaactttgtatgt |
334 |
Q |
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| T |
41651341 |
tcaatcatgccaaaatcaaacatgaattctgttttttacatttgcatattggcaaactaatgccaaattttgagtgctcattatgccaattttgtatgt |
41651439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 334
Target Start/End: Complemental strand, 43226790 - 43226691
Alignment:
| Q |
236 |
tcaatcatgccaaagtgaaacatgacttatatttctt-acattttcatattggcaaactgatgccaaattttgggttctcattacgccaactttgtatgt |
334 |
Q |
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|||||||||||||| | |||||||| || ||||| || |||||| |||||||||| ||| |||||||||||| || ||||||| ||||| ||| ||||| |
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| T |
43226790 |
tcaatcatgccaaaatcaaacatgaattctatttttttacatttgcatattggcacactaatgccaaattttaagtgctcattatgccaattttttatgt |
43226691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 43223388 - 43223355
Alignment:
| Q |
30 |
gatcacaatttaaaacacaaaaatggattcctta |
63 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
43223388 |
gatcacaatttaaaacacaaaaatggattcctta |
43223355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 43205509 - 43205461
Alignment:
| Q |
281 |
atattggcaaactgatgccaaattttgggttctcattacgccaactttg |
329 |
Q |
| |
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||||||||||||||||||||||||||| || |||||| |||||||||| |
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|
| T |
43205509 |
atattggcaaactgatgccaaattttgagtattcattatgccaactttg |
43205461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 25929016 - 25928955
Alignment:
| Q |
275 |
attttcatattggcaaactgatgccaaattttgggttctcattacgccaactttgtatgtta |
336 |
Q |
| |
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|||| |||||||||||||||||||||||||||| || ||| || ||||| ||||||||||| |
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| T |
25929016 |
atttgcatattggcaaactgatgccaaattttgagtgctctttgtgccaattttgtatgtta |
25928955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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