View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_65 (Length: 414)
Name: NF1390_low_65
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 111 - 405
Target Start/End: Original strand, 1530102 - 1530396
Alignment:
| Q |
111 |
aatttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattctattgagtggtgaaatggtgattgattattgagatgttagttat |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530102 |
aatttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattctattgagtggtgaaatggtgattgattattgagatgttagttat |
1530201 |
T |
|
| Q |
211 |
ttttagctgtatataatttgtgttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530202 |
ttttagctgtatataatttgtgttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttga |
1530301 |
T |
|
| Q |
311 |
ttaattatgaattagttaggatggatttgcagaataatatgcactattcttatatttatgttcatttcaatttggcctaatttttgcagaataat |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530302 |
ttaattatgaattagttaggatggatttgcagaataatatgcactattcttatatttatgttcatttcaatttggcctaatttttgcagaataat |
1530396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 111 - 401
Target Start/End: Complemental strand, 22476614 - 22476322
Alignment:
| Q |
111 |
aatttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattct-attgagtggtgaaatggtgattgattattgagatgttagtta |
209 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22476614 |
aatttatcagagtgatccttggttctgggtatgcttgatgataatttgctggattcttattgagtggtgaaatggtgattggttattgagatgttagtta |
22476515 |
T |
|
| Q |
210 |
tttttagctgtatataatttgtgtttttt-ggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgttt |
308 |
Q |
| |
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||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22476514 |
tttttagttgtatataatttttgtttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgttt |
22476415 |
T |
|
| Q |
309 |
gattaattatgaattagttaggatggatttgcagaataatatgcactattcttatatttatgttcatttcaatttggcctaatttttgcagaa |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22476414 |
gattaattatgaattagttaggatggatttgcagaataatatgcactattcttatatttatgttcatttcaatttggcctaatttttgcagaa |
22476322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 111 - 405
Target Start/End: Original strand, 26841876 - 26842174
Alignment:
| Q |
111 |
aatttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattct-attgagtggtgaaatggtgattgattattgagatgttagtta |
209 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26841876 |
aatttatcagagtgatccttggttctgggtatgcttgatgataatttgctagattcttattgagtggtgaaatggtgattgattattgagatgttagtta |
26841975 |
T |
|
| Q |
210 |
tttttagctgtatataatttgtgttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttg |
309 |
Q |
| |
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||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26841976 |
tttttagttgtatataatctgtgttttttggaaattggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttg |
26842075 |
T |
|
| Q |
310 |
attaattatgaattagttaggatggatttgcagaataatatgcacta---ttcttatatttatgttcatttcaatttggcctaatttttgcagaataat |
405 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26842076 |
attaattgtgaattagttaggatggatttgcagaataatatgcactattcttcttatatttatgttcatttcaatttggcctaatttttgcagaataat |
26842174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 112 - 353
Target Start/End: Original strand, 29099185 - 29099432
Alignment:
| Q |
112 |
atttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattc-tattgagtggtgaaatggtgattgattattgagatgttagttat |
210 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29099185 |
atttatcagagtgattcttgcttctggttatgcttgatgatggtttgctggattcatattgagtggtgaaatggtgattgattattgagatgttagttac |
29099284 |
T |
|
| Q |
211 |
ttttagctgtatataattt-----gtgttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattg |
305 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |
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|
| T |
29099285 |
ttttagctgtatataatataatctgtgttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgtctgtggaagagattg |
29099384 |
T |
|
| Q |
306 |
tttgattaattatgaattagttaggatggatttgcagaataatatgca |
353 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
29099385 |
cttgattaattaggaattagttaggatggatttgcagaataatatgca |
29099432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 21923066 - 21923182
Alignment:
| Q |
112 |
atttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattct-attgagtggtgaaatggtgattgattattgagatgttagttat |
210 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21923066 |
atttatcagagtgatccttggttctggttatgcttgatgataatttgttggattcttattgagtggtgaaatggtgattaattattgagatgttagttat |
21923165 |
T |
|
| Q |
211 |
ttttagctgtatataat |
227 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
21923166 |
ttttagctgtatataat |
21923182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 47907295 - 47907376
Alignment:
| Q |
7 |
ggaagtgtttcggtgttttggagacaaggtttggataaggtcatattcaaaatgtattgtaaatagcattgtatttaaagtt |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47907295 |
ggaagtgtttcggtgttttggagacaaggtttggataaggtcatattcaaaatgtattgtaaatagcattgtatttaaagtt |
47907376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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