View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_low_67 (Length: 395)

Name: NF1390_low_67
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_low_67
NF1390_low_67
[»] chr3 (24 HSPs)
chr3 (29-395)||(23406886-23407247)
chr3 (29-394)||(23465541-23465903)
chr3 (214-395)||(23456171-23456350)
chr3 (274-395)||(23480897-23481018)
chr3 (220-395)||(23388526-23388699)
chr3 (214-395)||(23449407-23449590)
chr3 (214-394)||(23501171-23501353)
chr3 (274-395)||(23354037-23354157)
chr3 (326-395)||(23435605-23435674)
chr3 (326-395)||(23442017-23442086)
chr3 (326-395)||(23474549-23474618)
chr3 (73-152)||(23360842-23360920)
chr3 (73-152)||(23367682-23367760)
chr3 (82-152)||(23436367-23436436)
chr3 (73-148)||(23389406-23389480)
chr3 (73-152)||(23458939-23459020)
chr3 (322-393)||(35766086-35766157)
chr3 (304-391)||(36009892-36009979)
chr3 (78-152)||(23501484-23501561)
chr3 (73-150)||(23449608-23449688)
chr3 (339-395)||(36025601-36025657)
chr3 (349-395)||(21087524-21087570)
chr3 (335-395)||(36004840-36004900)
chr3 (82-149)||(23475172-23475239)
[»] scaffold0201 (2 HSPs)
scaffold0201 (214-395)||(13714-13884)
scaffold0201 (73-111)||(16168-16206)
[»] scaffold0570 (2 HSPs)
scaffold0570 (275-395)||(9506-9626)
scaffold0570 (73-113)||(8701-8740)
[»] scaffold0022 (2 HSPs)
scaffold0022 (274-395)||(167422-167540)
scaffold0022 (73-113)||(167131-167171)
[»] chr4 (1 HSPs)
chr4 (303-395)||(12894500-12894592)
[»] chr6 (1 HSPs)
chr6 (333-370)||(29733309-29733346)
[»] chr8 (1 HSPs)
chr8 (339-371)||(12588341-12588373)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 29 - 395
Target Start/End: Complemental strand, 23407247 - 23406886
Alignment:
Q  29 agctaagccatactactgttgggatttatgactttaaagtcttcttgcatgaagctggattctgactttggtatgatcttttttcttcttaattttaatt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23407247 agctaagccatactactgttgggatttatgactttaaagtcttcttgcatgaagctggattctgactttgttatgatcttttttcttcttaattttaatt 23407148  T
Q  129 taactactagtttctctaattacaacgagaatgagtgtggtcaaaagtatcaaggacacatttaaacattacnnnnnnnnnnnnnattgtagcattgtga 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||             |||||||||||||||    
T  23407147 taactactagtttctctaattacaacgagaatgagtgtggtcaaaagtatcaagaacacatttaaacattac-----ttttttttattgtagcattgtga 23407053  T
Q  229 ttagtggcttagtacaggcattcggaattcataaccgtcacgaggagaaaatgagcagtgctttttcctccatatcttcttctgatgtggtgcctccgaa 328  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||  |||    
T  23407052 ttagtggcttagtacaggcactcggaattcataatcgtcacgaggagaaaatgagcagtgctttttcctctatatcttcttctgatgtggtccctaagaa 23406953  T
Q  329 aaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23406952 aaaatatgaagtttttcttagctttcgaggtgaggatactcgcagaaacttcactagccatctttat 23406886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 394
Target Start/End: Complemental strand, 23465903 - 23465541
Alignment:
Q  29 agctaagccatactactgttgggatttatgactttaaagtcttcttgcatgaagctggattctgactttggtatgatcttttttcttcttaattttaatt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23465903 agctaagccatactactgttgggatttatgactttaaagtcttcttgcatgaagcttgattctgactttggtatgatcttttttcttcttaattttaatt 23465804  T
Q  129 taactactagtttctctaattacaacgagaatgagtgtggtcaaaagtatcaaggacacatttaaacattacnnnnnnnnnnnnnattgtagcattgtga 228  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||             |||||||||||||||    
T  23465803 taacaactagtttctctaattacaacgagaatgagtgtggtcaaaagtatcaagaacaca-ataaacattac--tttttttttttattgtagcattgtga 23465707  T
Q  229 ttagtggcttagtacaggcattcggaattcataaccgtcacgaggagaaaatgagcagtgctttttcctccatatcttcttctgatgtggtgcctccgaa 328  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||  |||    
T  23465706 ttagtggcttagtacaggccctgggaattcataaccgtcacgaggagaaaatgagcagtgctttttcctctgtatcttcttctgatgtggtccctaagaa 23465607  T
Q  329 aaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatcttta 394  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23465606 aaaatatgaggtttttcttagctttcgaggtgaggatactcgcagaaacttcactagccatcttta 23465541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 214 - 395
Target Start/End: Complemental strand, 23456350 - 23456171
Alignment:
Q  214 attgtagcattgtgattagtggcttagtacaggcattcggaattcataaccgtcacgaggagaaaatgagcagtgctttttcctccatatcttcttctga 313  Q
    |||||||||||||||||||||||||||| |||||||| |||| ||||||||| | ||   ||||||||||||||||||||||||| |||||||||||| |    
T  23456350 attgtagcattgtgattagtggcttagtgcaggcatttggaaatcataaccgccgcgc--agaaaatgagcagtgctttttcctctatatcttcttctta 23456253  T
Q  314 tgtggtgcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23456252 tgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatctttat 23456171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 274 - 395
Target Start/End: Complemental strand, 23481018 - 23480897
Alignment:
Q  274 agaaaatgagcagtgctttttcctccatatcttcttctgatgtggtgcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcag 373  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23481018 agaaaatgagcagtgctttttcttccatatcttcttctgatgtggtgcctctgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcag 23480919  T
Q  374 aaacttcaccagccatctttat 395  Q
    ||||||||||||||||||||||    
T  23480918 aaacttcaccagccatctttat 23480897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 220 - 395
Target Start/End: Complemental strand, 23388699 - 23388526
Alignment:
Q  220 gcattgtgattagtggcttagtacaggcattcggaattcataaccgtcacgaggagaaaatgagcagtgctttttcctccatatcttcttctgatgtggt 319  Q
    |||||||||||||||||||||| |||||| | ||||||||||| | || |||| |||||||||||||||||||||||||  |||| |||||   |||||     
T  23388699 gcattgtgattagtggcttagtgcaggcacttggaattcataatc-tc-cgagcagaaaatgagcagtgctttttcctctgtatcctcttcctctgtggc 23388602  T
Q  320 gcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  23388601 gcctcagaaaaaatatgacgtttttcttagctttcgaggtgatgatactcgcagaaacttcacgagccatctttat 23388526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 214 - 395
Target Start/End: Complemental strand, 23449590 - 23449407
Alignment:
Q  214 attgtagcattgtgattagtggctta----gtacaggcattcggaattcataaccgtcacgaggagaaaatgagcagtgctttttcctccatatcttctt 309  Q
    ||||||||||||||||||||||| ||    || |||||| | |||||||||||| | |  | |  ||||||||||||||| |||||||| |||  |||||    
T  23449590 attgtagcattgtgattagtggcctaatcagtgcaggcacttggaattcataactgcc--gtgccgaaaatgagcagtgccttttcctctatagtttctt 23449493  T
Q  310 ctgatgtggtgcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23449492 ctgatgtggtgcctcagaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcactagccatctttat 23449407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 214 - 394
Target Start/End: Complemental strand, 23501353 - 23501171
Alignment:
Q  214 attgtagcattgtgattagtggctta----gtacaggcattcggaattcataaccgtcacgaggagaaaatgagcagtgctttttcctccatatcttctt 309  Q
    ||||||||||||||||||||||| ||    || |||||| | |||||||||||| | | ||  ||  |||||||||||||||||||||| |||  |||||    
T  23501353 attgtagcattgtgattagtggcctaatcagtgcaggcacttggaattcataactgccgcgccga--aaatgagcagtgctttttcctctatagtttctt 23501256  T
Q  310 ctgatgtggtgcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatcttta 394  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23501255 ctgatgtggtgcctcagaaaaaatatgacatttttcttagctttcgaggtgaggatactcgcagaaacttcactagccatcttta 23501171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 274 - 395
Target Start/End: Complemental strand, 23354157 - 23354037
Alignment:
Q  274 agaaaatgagcagtgctttttcctccatatcttcttctgatgtggtgcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcag 373  Q
    |||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  23354157 agaaaatgactagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcga-gcgaggatacccgcag 23354059  T
Q  374 aaacttcaccagccatctttat 395  Q
    ||||||||| ||||||||||||    
T  23354058 aaacttcacgagccatctttat 23354037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 23435674 - 23435605
Alignment:
Q  326 gaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  23435674 gaaaaaatatgacgtttttcttagctttcgaggtgaggatacccgcagaaacttcacatgccatctttat 23435605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 23442086 - 23442017
Alignment:
Q  326 gaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  23442086 gaaaaaatatgacgtttttcttagctttcgaggtgaggatacccgcagaaacttcacatgccatctttat 23442017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 23474618 - 23474549
Alignment:
Q  326 gaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  23474618 gaaaaaatatgacgtttttcttagctttcgaggtgaggatacccgcagaaacttcacatgccatctttat 23474549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 23360920 - 23360842
Alignment:
Q  73 ttgcatgaagctggattctgactttggtatgatcttttttcttcttaattttaatttaactactagtttctctaattaca 152  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |  |||||||||||||||||||||||||||||||||    
T  23360920 ttgcatgaagctggattctgactttggtatgattttttttcct-tcgattttaatttaactactagtttctctaattaca 23360842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 23367760 - 23367682
Alignment:
Q  73 ttgcatgaagctggattctgactttggtatgatcttttttcttcttaattttaatttaactactagtttctctaattaca 152  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |  |||||||||||||||||||||||||||||||||    
T  23367760 ttgcatgaagctggattctgactttggtatgattttttttcct-tcgattttaatttaactactagtttctctaattaca 23367682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 23436436 - 23436367
Alignment:
Q  82 gctggattctgactttggtatgatcttttttcttcttaattttaatttaactactagtttctctaattaca 152  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||    
T  23436436 gctggattctgactttggtatgatcttttttcc-ctcaattttaatttaactactagtttctctaattaca 23436367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 23389480 - 23389406
Alignment:
Q  73 ttgcatgaagctggattctgactttggtatgatcttttttcttcttaattttaatttaactactagtttctctaat 148  Q
    |||||||||||||||||||||||||||||||||| ||||||  || | ||||||||||||||||||||||||||||    
T  23389480 ttgcatgaagctggattctgactttggtatgatcctttttc-cctcatttttaatttaactactagtttctctaat 23389406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 23459020 - 23458939
Alignment:
Q  73 ttgcatgaagctggatt---ctgactttggtatgatcttttttcttcttaattttaatttaactactagtttctctaattaca 152  Q
    |||||||||||||||||   ||||||||||||||||||||||||  || ||||||||||||||| ||||||||||||||||||    
T  23459020 ttgcatgaagctggattgatctgactttggtatgatcttttttcc-ctcaattttaatttaactgctagtttctctaattaca 23458939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 322 - 393
Target Start/End: Original strand, 35766086 - 35766157
Alignment:
Q  322 ctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatcttt 393  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||||||||   ||| |||| ||||||||||    
T  35766086 ctcctaaaaaatatgatgtttttcttagctttcgaggtgaagatactcgcgacaacatcacaagccatcttt 35766157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 36009979 - 36009892
Alignment:
Q  304 cttcttctgatgtggtgcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatct 391  Q
    ||||||||  ||||||| |||||||||||| |||||||||| |||| ||||| |||||||  ||||| |||||||||||  |||||||    
T  36009979 cttcttctattgtggtgtctccgaaaaaatttgacgtttttattagttttcgtggtgagggcactcgtagaaacttcacaggccatct 36009892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 23501561 - 23501484
Alignment:
Q  78 tgaagctggattctgactttggtatg----atcttttttcttcttaattttaatttaactactagtttctctaattaca 152  Q
    ||||||||||||||||||||||||||    ||||||||||  || | ||||||||||||||||| ||||||||||||||    
T  23501561 tgaagctggattctgactttggtatgtataatcttttttcc-ctcagttttaatttaactactactttctctaattaca 23501484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 23449688 - 23449608
Alignment:
Q  73 ttgcatgaagctggattctgactttggtatg----atcttttttcttcttaattttaatttaactactagtttctctaatta 150  Q
    ||||||||||||||||||||||||||||| |    ||||||||||  || |||||||||||| |||||| ||||||||||||    
T  23449688 ttgcatgaagctggattctgactttggtacgtataatcttttttcc-ctcaattttaatttatctactactttctctaatta 23449608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 36025657 - 36025601
Alignment:
Q  339 gtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    |||||| | |||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  36025657 gtttttatcagctttcgtggtgaggatactcgtagaaacttcacaagccatctttat 36025601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 21087570 - 21087524
Alignment:
Q  349 gctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||||    
T  21087570 gctttcgaggtgaggatactcgcaaaaacatcacaagccatctttat 21087524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 36004900 - 36004840
Alignment:
Q  335 tgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    |||||||||| |||||||| | |||||||||||| | ||||| ||||| ||||||||||||    
T  36004900 tgacgtttttattagcttttgtggtgaggatactggtagaaagttcacaagccatctttat 36004840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 23475239 - 23475172
Alignment:
Q  82 gctggattctgactttggtatgatcttttttcttcttaattttaatttaacta-ctagtttctctaatt 149  Q
    |||||||||||||||||||||||||| |||||   | |||| |||||||||||  ||||||||||||||    
T  23475239 gctggattctgactttggtatgatctattttc-cgtcaattataatttaactagttagtttctctaatt 23475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 214 - 395
Target Start/End: Complemental strand, 13884 - 13714
Alignment:
Q  214 attgtagcattgtgattagtggcttagtacaggcattcggaattcataaccgtcacgaggagaaaatgagcagtgctttttcctccatatcttcttctga 313  Q
    ||||| ||||||||||| |||||||||| |||||| | |||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  13884 attgttgcattgtgatttgtggcttagtgcaggcacttggaattcataaccgtcacgag-----------cagtgctttttcctccatatcttcttctga 13796  T
Q  314 tgtggtgcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  13795 tgtggtgccaccgaaaaaatatgatgtttttcttagctttcgaggtgaggatattcgcagaaacttcagaagccatctttat 13714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 16206 - 16168
Alignment:
Q  73 ttgcatgaagctggattctgactttggtatgatcttttt 111  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16206 ttgcatgaagctggattctgactttggtatgatcttttt 16168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 275 - 395
Target Start/End: Original strand, 9506 - 9626
Alignment:
Q  275 gaaaatgagcagtgctttttcctccatatcttcttctgatgtggtgcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcaga 374  Q
    |||||||||||||||| ||||||| |||  |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9506 gaaaatgagcagtgctatttcctctatagtttcttctgatgtggtgcctcagaaaaaatatgacatttttcttagctttcgaggtgaggatactcgcaga 9605  T
Q  375 aacttcaccagccatctttat 395  Q
    ||||| || ||||||||||||    
T  9606 aacttaacaagccatctttat 9626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 8701 - 8740
Alignment:
Q  73 ttgcatgaagctggattctgactttggtatgatcttttttc 113  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  8701 ttgcattaagctggat-ctgactttggtatgatcttttttc 8740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 274 - 395
Target Start/End: Original strand, 167422 - 167540
Alignment:
Q  274 agaaaatgagcagtgctttttcctccatatcttcttctgatgtggtgcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcag 373  Q
    ||||||||||||||| |||||||||  ||||| ||   ||||||| ||||  |||||||||||| || ||||||||||||||||||||||||||||||||    
T  167422 agaaaatgagcagtgttttttcctctgtatctact---gatgtggggcctaagaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcag 167518  T
Q  374 aaacttcaccagccatctttat 395  Q
    ||||||||| ||||||||||||    
T  167519 aaacttcacaagccatctttat 167540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 167131 - 167171
Alignment:
Q  73 ttgcatgaagctggattctgactttggtatgatcttttttc 113  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  167131 ttgcatgaagttggattctgactttggtatcatcttttttc 167171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 395
Target Start/End: Original strand, 12894500 - 12894592
Alignment:
Q  303 tcttcttctgatgtggtgcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcagaaacttcaccagccatctttat 395  Q
    ||||||||||  |||| ||||  |||||| | ||| |||||| | |||||||| |||||||||||||| |||| |||||| || |||||||||    
T  12894500 tcttcttctgcggtggcgcctttgaaaaagtctgatgtttttataagctttcgcggtgaggatactcgtagaagcttcacaagtcatctttat 12894592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 29733346 - 29733309
Alignment:
Q  333 tatgacgtttttcttagctttcgaggtgaggatactcg 370  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  29733346 tatgatgtttttctcagctttcgaggtgaggatactcg 29733309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 371
Target Start/End: Original strand, 12588341 - 12588373
Alignment:
Q  339 gtttttcttagctttcgaggtgaggatactcgc 371  Q
    |||||||| ||||||||||||||||||||||||    
T  12588341 gtttttctcagctttcgaggtgaggatactcgc 12588373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 16338 times since January 2019
Visitors: 3768