View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_70 (Length: 385)
Name: NF1390_low_70
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 379
Target Start/End: Complemental strand, 26469711 - 26469366
Alignment:
| Q |
29 |
agaaaaggtgtagtgtatggtgtgttttatgaatgcttttcattctagtctagtgaactattatctagtcttttgtacatcatatataatccaaaataca |
128 |
Q |
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| T |
26469711 |
agaaaaggtgtagtgtatggtgtgttttatgaatgcttttcattctagtctagtgaactattatctagtcttttgtacatcatatataatccaaaata-- |
26469614 |
T |
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| Q |
129 |
tataatattttgagtttgattggtatgcaatatnnnnnnnn-gtagttgagatattttgagaattaatacaacaaattagttatacaaacatttaccttc |
227 |
Q |
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| T |
26469613 |
-------ttttgagtttgattggtatgcaatataaaaaaaaagtagttgagatattttgaaaatt--tacaacaaattagttatacaaacatttaccttc |
26469523 |
T |
|
| Q |
228 |
nnnnnnn-gttacacaaacatttttacactaacaagacatatcgaccaaagttgtgtagtaatagtccttttatcatattaattaaagttgtactgctaa |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26469522 |
aaaaaaaagttacacaaacatttttacactaacaagacatatcgaccaaagctgtgtactaatagtccttttataatattaattaaagttgtactgctaa |
26469423 |
T |
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| Q |
327 |
gttggcacatta----tgaacaaccattgatataaattaaattctaatattcttcga |
379 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
26469422 |
cttggcacattatgaatgaacaaccattgatataaattaaattataatattattcga |
26469366 |
T |
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