View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_low_72 (Length: 377)
Name: NF1390_low_72
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_72 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 14977221 - 14977457
Alignment:
| Q |
22 |
catcatcaaaacaaaaaccttaaattctttgttccagaaaacnnnnnnnnncatggttctttgaaacttcaaaaacctcgcatgttatggatctagaagg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14977221 |
catcatcaaaacaaaaaccttaaattcttggttccagaaaacaaaaaaaaacatggttctttgaaacttcaaaaacctcgcatgttatggatctagaagg |
14977320 |
T |
|
| Q |
122 |
tggaactcgtcgaaatttttcaaaggtaacagaatgggcatgcttcaaaaccttaaaagtttcaatttttacttctttggtagattctattttcgattct |
221 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14977321 |
tggaactcgtcgaaattcttcaaaggtaacagaatgggcatgcttcaaaaccttaaaagtttcaatttttacttctttggtagattctattttcgattct |
14977420 |
T |
|
| Q |
222 |
aacaacgtttgaacatgtttgtaatgttacactgatg |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14977421 |
aacaacgtttgaacatgtttgtaatgttacactgatg |
14977457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 53335260 - 53335299
Alignment:
| Q |
309 |
catggaccattcttacattgaattagaaaatcttatccct |
348 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53335260 |
catggaccattcttacattgaattaaaaaatcttatccct |
53335299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14959 times since January 2019
Visitors: 8422