View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_73 (Length: 376)
Name: NF1390_low_73
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1390_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 14977221 - 14977457
Alignment:
Q |
22 |
catcatcaaaacaaaaaccttaaattctttgttccagaaaacnnnnnnnn-catggttctttgaaacttcaaaaacctcgcatgttatggatctagaagg |
120 |
Q |
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T |
14977221 |
catcatcaaaacaaaaaccttaaattcttggttccagaaaacaaaaaaaaacatggttctttgaaacttcaaaaacctcgcatgttatggatctagaagg |
14977320 |
T |
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Q |
121 |
tggaactcgtcgaaatttttcaaaggtaacagaatgggcatgcttcaaaaccttaaaagtttcaatttttacttctttggtagattctattttcgattct |
220 |
Q |
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T |
14977321 |
tggaactcgtcgaaattcttcaaaggtaacagaatgggcatgcttcaaaaccttaaaagtttcaatttttacttctttggtagattctattttcgattct |
14977420 |
T |
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Q |
221 |
aacaacgtttgaacatgtttgtaatgttacactgatg |
257 |
Q |
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T |
14977421 |
aacaacgtttgaacatgtttgtaatgttacactgatg |
14977457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 53335260 - 53335299
Alignment:
Q |
308 |
catggaccattcttacattgaattagaaaatcttatccct |
347 |
Q |
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T |
53335260 |
catggaccattcttacattgaattaaaaaatcttatccct |
53335299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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