View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_low_77 (Length: 370)

Name: NF1390_low_77
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_low_77
NF1390_low_77
[»] chr5 (6 HSPs)
chr5 (106-370)||(35364903-35365167)
chr5 (108-346)||(35374473-35374708)
chr5 (215-348)||(35404646-35404776)
chr5 (277-348)||(35752882-35752953)
chr5 (288-370)||(35421711-35421793)
chr5 (288-370)||(35435056-35435138)
[»] chr1 (3 HSPs)
chr1 (108-370)||(10421494-10421756)
chr1 (108-363)||(10411855-10412107)
chr1 (156-349)||(10417623-10417816)
[»] chr2 (4 HSPs)
chr2 (156-362)||(30669753-30669956)
chr2 (108-363)||(30633343-30633595)
chr2 (108-363)||(30661072-30661324)
chr2 (217-363)||(30631238-30631381)
[»] chr7 (1 HSPs)
chr7 (228-354)||(29625129-29625252)
[»] chr8 (1 HSPs)
chr8 (159-351)||(13563426-13563614)
[»] chr3 (1 HSPs)
chr3 (305-361)||(1153267-1153323)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 106 - 370
Target Start/End: Complemental strand, 35365167 - 35364903
Alignment:
Q  106 aggatgggatagtaccaactagattattgccacggagtttcaattcaatgagttgcatcattgacccaaaccttgtcggaattcttccaatgagttgatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35365167 aggatgggatagtaccaactagattattgccacggagtttcaatcgaatgagttgcatcattgacccaaaccttgtcggaattcttccaatgagttgatt 35365068  T
Q  206 gaagcccagattaattactttgatatttgtgcaattagtgagctccataggaatctctccttgaagtttgctgttgttggttaagtgaagaatttgcagc 305  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35365067 gaagcccagattaattactttgatatttgagcaattagtgagctccataggaatctctccttgaagtttgctgttgttggttaagtgaagaatttgcagc 35364968  T
Q  306 cgcttcaaacgaccaacttgttttggaatttcaccatgcaagtcgacgtttgaaaggtagagttt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35364967 cgcttcaaacgaccaacttgttttggaatttcaccatgcaagtcgacgtttgaaaggtagagttt 35364903  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 346
Target Start/End: Complemental strand, 35374708 - 35374473
Alignment:
Q  108 gatgggatagtaccaactagattattgccacggagtttcaattcaatgagttgcatcattgacccaaaccttgtcggaattcttccaatgagttgattga 207  Q
    ||||| ||||||||||||||||||||| ||  ||| |||| || | | |||||||||||||||||||||| | |||||||||||||  ||||| ||||||    
T  35374708 gatggaatagtaccaactagattattggcaacgagattcagttgagtaagttgcatcattgacccaaaccatttcggaattcttccggtgagtcgattga 35374609  T
Q  208 agcccagattaattactttgatatttgtgcaattagtgagctccataggaatctctccttgaagtttgctgttgttggttaagtgaagaatttgcagccg 307  Q
      || | |  |||| | |||||  | ||||| |||| ||| |||||||||| ||| || ||||| |   |||||| | |||||| |||||  ||||  ||    
T  35374608 ttcctaaaaaaattcccttgatggtcgtgcagttagagagttccataggaacctcaccatgaagat---tgttgtcgcttaagtcaagaagatgcaatcg 35374512  T
Q  308 cttcaaacgaccaacttgttttggaatttcaccatgcaa 346  Q
    ||| ||||||||||| ||  |||||||||||||||||||    
T  35374511 ctttaaacgaccaacctgacttggaatttcaccatgcaa 35374473  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 348
Target Start/End: Complemental strand, 35404776 - 35404646
Alignment:
Q  215 attaattactttgatatttgtgcaattagtgagctccataggaatctctccttgaagtttgctgttgttggt-taagtgaagaatttgcagccgcttcaa 313  Q
    ||||||||| |||||||||| |||||||| |||||| || ||||||||||||||||    | || | ||||| ||||| ||||| |||||  ||||||||    
T  35404776 attaattaccttgatatttgagcaattagagagctctatgggaatctctccttgaa----gatggttttggtctaagtaaagaacttgcaatcgcttcaa 35404681  T
Q  314 acgaccaacttgttttggaatttcaccatgcaagt 348  Q
    || ||||||||||||||||||| |||||| |||||    
T  35404680 acaaccaacttgttttggaattccaccatacaagt 35404646  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 348
Target Start/End: Complemental strand, 35752953 - 35752882
Alignment:
Q  277 tgttgttggttaagtgaagaatttgcagccgcttcaaacgaccaacttgttttggaatttcaccatgcaagt 348  Q
    |||||||| |||||| || || ||||| ||||||||||| ||||||||||||||||| ||||||||||||||    
T  35752953 tgttgttgcttaagtcaacaacttgcaaccgcttcaaacaaccaacttgttttggaacttcaccatgcaagt 35752882  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 370
Target Start/End: Complemental strand, 35421793 - 35421711
Alignment:
Q  288 aagtgaagaatttgcagccgcttcaaacgaccaacttgttttggaatttcaccatgcaagtcgacgtttgaaaggtagagttt 370  Q
    |||| ||||| ||||| || ||||||| ||||||||| ||||||||||||||| ||||| |||| ||| ||||| | ||||||    
T  35421793 aagtcaagaacttgcaacctcttcaaaagaccaacttcttttggaatttcaccgtgcaaatcgatgttggaaagtttgagttt 35421711  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 370
Target Start/End: Complemental strand, 35435138 - 35435056
Alignment:
Q  288 aagtgaagaatttgcagccgcttcaaacgaccaacttgttttggaatttcaccatgcaagtcgacgtttgaaaggtagagttt 370  Q
    |||| ||||| ||||| || ||||||| ||||||||| ||||||||||||||| ||||| |||| ||| ||||| | ||||||    
T  35435138 aagtcaagaacttgcaacctcttcaaaagaccaacttcttttggaatttcaccgtgcaaatcgatgttggaaagtttgagttt 35435056  T

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Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 108 - 370
Target Start/End: Original strand, 10421494 - 10421756
Alignment:
Q  108 gatgggatagtaccaactagattattgccacggagtttcaattcaatgagttgcatcattgacccaaaccttgtcggaattcttccaatgagttgattga 207  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10421494 gatgggatagtaccaactagattattggcactgagtttcaattcaataagttgcatcattgacccaaaccttgttggaattcttccaatgagttgattga 10421593  T
Q  208 agcccagattaattactttgatatttgtgcaattagtgagctccataggaatctctccttgaagtttgctgttgttggttaagtgaagaatttgcagccg 307  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  10421594 agcccagattaattactttgatatttatgcaattactgagctccataggaatctctccttgaagtttgttgttgttggttaagtgaagaacttgcagccg 10421693  T
Q  308 cttcaaacgaccaacttgttttggaatttcaccatgcaagtcgacgtttgaaaggtagagttt 370  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10421694 cttcaaacgaccaacttgttttggaatttcaccatgcaagtcaacgtttgaaaggtagagttt 10421756  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 108 - 363
Target Start/End: Original strand, 10411855 - 10412107
Alignment:
Q  108 gatgggatagtaccaactagattattgccacggagtttcaattcaatgagttgcatcattgacccaaaccttgtcggaattcttccaatgagttgattga 207  Q
    ||||| |||||||||||||||||||||  ||  ||   ||| ||| | |||||||||||| ||||||| | ||  |||||||||||||||||||||||||    
T  10411855 gatggaatagtaccaactagattattgtaactaagaaacaactcagtaagttgcatcatttacccaaagcatgcaggaattcttccaatgagttgattga 10411954  T
Q  208 agcccagattaattactttgatatttgtgcaattagtgagctccataggaatctctccttgaagtttgctgttgttggttaagtgaagaatttgcagccg 307  Q
    |  | | |  |||||| |||||||||||||| |||| |||||| || |||||||||||  |||| | |   ||     |||||| ||||| |||||  ||    
T  10411955 aagctaaacaaattaccttgatatttgtgcagttagcgagctctatgggaatctctccaagaagatgg---ttaaatcttaagtcaagaacttgcaatcg 10412051  T
Q  308 cttcaaacgaccaacttgttttggaatttcaccatgcaagtcgacgtttgaaaggt 363  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  10412052 cttcaaacgaccaacttgttttggaatttcaccatgcaagttgacatttgaaaggt 10412107  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 349
Target Start/End: Original strand, 10417623 - 10417816
Alignment:
Q  156 agttgcatcattgacccaaaccttgtcggaattcttccaatga---gttgattgaagcccagattaattactttgatatttgtgcaattagtgagctcca 252  Q
    |||||||||||||| ||||||| ||| |||||||||||  |||   ||||||| ||  | | || |||||| |  ||||||||||||||||||||||| |    
T  10417623 agttgcatcattgatccaaaccatgtgggaattcttcctgtgatcagttgattcaatgcaaaatcaattacctcaatatttgtgcaattagtgagctcta 10417722  T
Q  253 taggaatctctccttgaagtttgctgttgttggttaagtgaagaatttgcagccgcttcaaacgaccaacttgttttggaatttcaccatgcaagtc 349  Q
    | ||||||||||||||||| | |   ||     ||||   ||||| |||||  |||||||||||||||| |||||||||||||| ||||| ||||||    
T  10417723 tgggaatctctccttgaagatgg---ttaaatcttaacacaagaacttgcaatcgcttcaaacgaccaatttgttttggaattttaccatacaagtc 10417816  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 362
Target Start/End: Complemental strand, 30669956 - 30669753
Alignment:
Q  156 agttgcatcattgacccaaaccttgtcggaattcttccaatgagttgattgaagcccagattaattactttgatatttgtgcaattagtgagctccatag 255  Q
    ||||||||||||||||||||   ||  |||| |||||||||||||| ||||||    | || |||||| |||||||||||||| ||||||||||| || |    
T  30669956 agttgcatcattgacccaaagtatgcaggaactcttccaatgagtttattgaaaggtaaatcaattaccttgatatttgtgcagttagtgagctctatgg 30669857  T
Q  256 gaatctctccttgaagtttgctgttgttggttaagtgaagaatttgcagccgcttcaaacgaccaacttgttttggaatttcaccatgcaagtcgacgtt 355  Q
    |||||||||||||||| |   |||||||    ||| |||||| | |||  || |||||| ||||||||||| ||||||||||||||||||||| ||| ||    
T  30669856 gaatctctccttgaagat---tgttgtttccaaagagaagaactcgcaatcgtttcaaaagaccaacttgtgttggaatttcaccatgcaagttgacatt 30669760  T
Q  356 tgaaagg 362  Q
    |||||||    
T  30669759 tgaaagg 30669753  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 108 - 363
Target Start/End: Complemental strand, 30633595 - 30633343
Alignment:
Q  108 gatgggatagtaccaactagattattgccacggagtttcaattcaatgagttgcatcattgacccaaaccttgtcggaattcttccaatgagttgattga 207  Q
    ||||| |||||||||||||||||||||  ||  ||   ||| ||| | |||||||||||||| |||||   ||  |||| |||||||||||||| ||| |    
T  30633595 gatggaatagtaccaactagattattgtgaccaagagacaactcagtaagttgcatcattgatccaaagtatgcaggaactcttccaatgagtttattca 30633496  T
Q  208 agcccagattaattactttgatatttgtgcaattagtgagctccataggaatctctccttgaagtttgctgttgttggttaagtgaagaatttgcagccg 307  Q
    |  | |   ||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| |   |||||||   ||||| ||||| | |||  |     
T  30633495 aagctaacctaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagat---tgttgtttcctaagtcaagaactcgcaatcc 30633399  T
Q  308 cttcaaacgaccaacttgttttggaatttcaccatgcaagtcgacgtttgaaaggt 363  Q
     |||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  30633398 tttcaaaagaccaacttgtgttggaatttcaccatgcaagttgacatttgaaaggt 30633343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 108 - 363
Target Start/End: Complemental strand, 30661324 - 30661072
Alignment:
Q  108 gatgggatagtaccaactagattattgccacggagtttcaattcaatgagttgcatcattgacccaaaccttgtcggaattcttccaatgagttgattga 207  Q
    ||||| |||||||||||||||||||||  ||  ||   ||| ||| | |||||||||||||| |||||   ||  |||| |||||||||||||| ||| |    
T  30661324 gatggaatagtaccaactagattattgtgaccaagagacaactcagtaagttgcatcattgatccaaagtatgcaggaactcttccaatgagtttattca 30661225  T
Q  208 agcccagattaattactttgatatttgtgcaattagtgagctccataggaatctctccttgaagtttgctgttgttggttaagtgaagaatttgcagccg 307  Q
    |  | |   ||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| |   |||||||   ||||| ||||| | |||  |     
T  30661224 aagctaacctaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagat---tgttgtttcctaagtcaagaactcgcaatcc 30661128  T
Q  308 cttcaaacgaccaacttgttttggaatttcaccatgcaagtcgacgtttgaaaggt 363  Q
     |||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  30661127 tttcaaaagaccaacttgtgttggaatttcaccatgcaagttgacatttgaaaggt 30661072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 217 - 363
Target Start/End: Complemental strand, 30631381 - 30631238
Alignment:
Q  217 taattactttgatatttgtgcaattagtgagctccataggaatctctccttgaagtttgctgttgttggttaagtgaagaatttgcagccgcttcaaacg 316  Q
    ||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| |   |||||||   ||||| ||||| | |||  || |||||| |    
T  30631381 taattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagat---tgttgtttactaagtcaagaactcgcaatcgtttcaaaag 30631285  T
Q  317 accaacttgttttggaatttcaccatgcaagtcgacgtttgaaaggt 363  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  30631284 accaacttgtgttggaatttcaccatgcaagttgacatttgaaaggt 30631238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 354
Target Start/End: Original strand, 29625129 - 29625252
Alignment:
Q  228 atatttgtgcaattagtgagctccataggaatctctccttgaagtttgctgttgttggttaagtgaagaatttgcagccgcttcaaacgaccaacttgtt 327  Q
    ||||||||||| || ||||||||  |||||||||||||||||||||||   || | ||||||||  |||| || |||  |||||||||| ||||||||      
T  29625129 atatttgtgcagtttgtgagctctgtaggaatctctccttgaagtttg---ttatcggttaagttgagaacttccagttgcttcaaacggccaacttgac 29625225  T
Q  328 ttggaatttcaccatgcaagtcgacgt 354  Q
    |||||||||||||||||||||||||||    
T  29625226 ttggaatttcaccatgcaagtcgacgt 29625252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 351
Target Start/End: Complemental strand, 13563614 - 13563426
Alignment:
Q  159 tgcatcattgacccaaaccttgtcggaattcttccaatgagttgattgaagcccagattaattactttgatatttgtgcaattagtgagctccataggaa 258  Q
    |||||||||||| ||||||   | |||| ||||||| |||||||||||   | || || |||||  |||||||| |||||||||| |||||| || ||||    
T  13563614 tgcatcattgactcaaaccacatgggaactcttccagtgagttgattgctccacatatcaattatcttgatattagtgcaattagcgagctctatcggaa 13563515  T
Q  259 tctctccttgaagtttgctgttgttggttaagtgaagaatttgcagccgcttcaaacgaccaacttgttttggaatttcaccatgcaagtcga 351  Q
    ||||||||||||   |  |||| ||  |||||| |||||||||||  | ||||||||||||||||| ||||||||||||| | ||||||||||    
T  13563514 tctctccttgaa---tattgttcttttttaagtcaagaatttgcaatcacttcaaacgaccaacttcttttggaatttcatc-tgcaagtcga 13563426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 1153323 - 1153267
Alignment:
Q  305 ccgcttcaaacgaccaacttgttttggaatttcaccatgcaagtcgacgtttgaaag 361  Q
    ||||||||||| |||| |||||||||||||||||||||||||| |||  ||||||||    
T  1153323 ccgcttcaaacaaccagcttgttttggaatttcaccatgcaagccgatatttgaaag 1153267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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