View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_8 (Length: 743)
Name: NF1390_low_8
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 8 - 632
Target Start/End: Complemental strand, 47506900 - 47506286
Alignment:
| Q |
8 |
caccacagacaccagcaaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatg |
107 |
Q |
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| T |
47506900 |
caccacagacaccagcaaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatg |
47506801 |
T |
|
| Q |
108 |
aatagcagcaagagaagagaaagggacagtcaaagcattgggatttgtgaatatcaaactctcttattataccataagatcgatgattgaattgaaacag |
207 |
Q |
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| T |
47506800 |
aatagcagcaagagaagagaaagggacagtcaaagcattgggatttgtgaatatcaaa--ctcttattataccataa----gatgattgaattgaaacag |
47506707 |
T |
|
| Q |
208 |
acacacttttaatttgttgaaataagtggtatgggagttagtggttgtggggtatataaactcgttattataagtgtgtcagaaagaaattttttataag |
307 |
Q |
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| T |
47506706 |
acacacttttaatttgttgaaataagtggtatgggagttagtggttgtggggtatataaactcgttattataagtgtgtcagaaagaaattttttataa- |
47506608 |
T |
|
| Q |
308 |
tatgtataatgcacacccaccacaaaacaatcatgttcacttatccccttccttcattgagttttttggggtcacatttcattttannnnnnnntgcatg |
407 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47506607 |
---gtataatgcatacccaccacaaaacaatcatgttcacttatccccttccttcattgagttttttggggtcacatttcattttacccccccctgcatg |
47506511 |
T |
|
| Q |
408 |
acagctctttccacaattcaactctacctatatacatatttagatgctgtaaatcctttctttttcaattttctaatttagtaaaacattgtcatcaatt |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47506510 |
acagctctttccacaattcaactctacctatatacatatttagatgctgtaaatcctttctttttcaattttctaatttagtaaaacattgtcatcaatt |
47506411 |
T |
|
| Q |
508 |
ttcctttgggccaataaaacagttgcaattaaggagtaccttgtccagaaagtgtgctacaaaaaatttaaatgatcaacaactgcctaaaattatccaa |
607 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47506410 |
tgcctttgggccaataaaacagttgcaattaaggagtaccttgtccagaaagtgtgctacaaaaaatttaaatgatcaacaactgcctaaaattatccaa |
47506311 |
T |
|
| Q |
608 |
gtctataaaacctagaaggtggtac |
632 |
Q |
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||||||||||||||||||||||||| |
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| T |
47506310 |
gtctataaaacctagaaggtggtac |
47506286 |
T |
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