View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_81 (Length: 364)
Name: NF1390_low_81
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 59 - 351
Target Start/End: Original strand, 35108513 - 35108805
Alignment:
| Q |
59 |
agaaaagcatgaaggaaagcaagtactgttttctgatttttgtgttgatttgaattcttctctatgcttttggaagctacataacatttccattgtctat |
158 |
Q |
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| T |
35108513 |
agaaaagcatgaaggaaagcaagtactgttttctgatttttgtgttgatttgaattcttctctatgcttttggaagctacataacatttccattgtctat |
35108612 |
T |
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| Q |
159 |
aagcagaatcacctaaaattttgccccatttcatcttcatatgtttctcccataaataatcacttctacatttttccctaagagatttacacacttgagc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35108613 |
aagcagaatcacctaaaattttgccccatttcatcttcatatgtttctcccataaataatcacttctacatttttccctaagagatttacacacttgagc |
35108712 |
T |
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| Q |
259 |
cacattgcataattcactaggtgaaagtttttcaagaatacaatccaatggtaaatcatgcaaatccaagagagaagctttctcttcctcttc |
351 |
Q |
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| T |
35108713 |
cacattgcataattcactaggtgaaagtttttcaagaatacaatccaatggtaaatcatgcaaatccaagagagaagctttctcttcctcttc |
35108805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 189 - 351
Target Start/End: Original strand, 35068210 - 35068372
Alignment:
| Q |
189 |
tcatcttcatatgtttctcccataaataatcacttctacatttttccctaagagatttacacacttgagccacattgcataattcactaggtgaaagttt |
288 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || ||||| |||||||||||||||||| ||||||||||||| |
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| T |
35068210 |
tcatcttcatatgtttctcccataaataataacttctacatctttccctaagagatttgcatacttgtgccacattgcataattcagtaggtgaaagttt |
35068309 |
T |
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| Q |
289 |
ttcaagaatacaatccaatggtaaatcatgcaaatccaagagagaagctttctcttcctcttc |
351 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
35068310 |
ttcaagaatacaatccaatggtaaatcatgcagatccaagagagaagctttatcttcctcttc |
35068372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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