View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_82 (Length: 360)
Name: NF1390_low_82
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1390_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 35671896 - 35672240
Alignment:
Q |
13 |
aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
112 |
Q |
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T |
35671896 |
aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgtagaatttg |
35671995 |
T |
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Q |
113 |
gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtgtaatactctagttttca |
212 |
Q |
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T |
35671996 |
attaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtatagtactctagttttca |
35672095 |
T |
|
Q |
213 |
ccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacacaccaaaaacatttcttgcctacatgtacaaagaataaatatcataatca |
312 |
Q |
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T |
35672096 |
ccaaaaagaagataaacaaattaacattgtaggcttttgatataagcacacaccaaaaacatttcttgcctacatgtataaagaatgaatatcataatca |
35672195 |
T |
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Q |
313 |
ctaacaacaattatatgctccataatcatcaacataacccaatcc |
357 |
Q |
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T |
35672196 |
ttaacaacaactatacgctccataatcatcaacagaacccaatcc |
35672240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 38456209 - 38456393
Alignment:
Q |
13 |
aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
112 |
Q |
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T |
38456209 |
aatatcatctcaaccattaatatatccactaccatttctcatctgctaagaaaaaagaaattaaattcaattgaaaaagttatttcaagtgcagaatttg |
38456308 |
T |
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Q |
113 |
gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtgta |
197 |
Q |
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T |
38456309 |
gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtgta |
38456393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 13805218 - 13805293
Alignment:
Q |
60 |
aagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttggttaagaaactaattcaaacata |
135 |
Q |
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T |
13805218 |
aagaaaaaagaaaaaaaaagcaattgaaaaagttatctcaactgcagaatttagtttagaaactaaatcaaacata |
13805293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 341
Target Start/End: Original strand, 19700244 - 19700389
Alignment:
Q |
202 |
tctagttttcaccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacacacca------aaaacatttcttgcctacatgtacaaag |
295 |
Q |
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T |
19700244 |
tctagttttcacaaaaaagaagattaacaaactacattgttaggcttttgatatcagcacactctacatcctaaaacaatttttgcctacacgtagaaag |
19700343 |
T |
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Q |
296 |
aataaatatcataatcactaacaacaattatatgctccataatcat |
341 |
Q |
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T |
19700344 |
catgaatatcataatcattaacaacaattatactctccacaatcat |
19700389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 20130989 - 20131211
Alignment:
Q |
13 |
aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
112 |
Q |
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T |
20130989 |
aatatcatctcaaccattaatatctccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
20131088 |
T |
|
Q |
113 |
gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagat----tatgtgtaatactctagtt |
208 |
Q |
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T |
20131089 |
gttaagaaactaattcaaacatagggcctacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatctatatgtagtactctagtt |
20131188 |
T |
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Q |
209 |
ttcaccaaaaagaagataaacaa |
231 |
Q |
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||||||||||||||||||||||| |
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T |
20131189 |
ttcaccaaaaagaagataaacaa |
20131211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 22201881 - 22201659
Alignment:
Q |
13 |
aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
112 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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T |
22201881 |
aatatcatctcaaccattaatatctccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
22201782 |
T |
|
Q |
113 |
gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagat----tatgtgtaatactctagtt |
208 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |
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T |
22201781 |
gttaagaaactaattcaaacatagggcctacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatctatatgtagtactctagtt |
22201682 |
T |
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Q |
209 |
ttcaccaaaaagaagataaacaa |
231 |
Q |
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||||||||||||||||||||||| |
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T |
22201681 |
ttcaccaaaaagaagataaacaa |
22201659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 341
Target Start/End: Original strand, 19668340 - 19668485
Alignment:
Q |
202 |
tctagttttcaccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacac------accaaaaacatttcttgcctacatgtacaaag |
295 |
Q |
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|||||||||||| ||||||||||| |||||| || | || |||||||||||||| ||||||| || |||||| || ||||||||| ||| |||| |
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T |
19668340 |
tctagttttcacaaaaaagaagattaacaaactacatttttaggcttttgatatcagcacactctacatcctaaaacaatttttgcctacacgtagaaag |
19668439 |
T |
|
Q |
296 |
aataaatatcataatcactaacaacaattatatgctccataatcat |
341 |
Q |
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|| ||||||||||||| |||||||||||||| ||||| |||||| |
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T |
19668440 |
catgaatatcataatcattaacaacaattatactctccacaatcat |
19668485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 341
Target Start/End: Complemental strand, 8803216 - 8803071
Alignment:
Q |
202 |
tctagttttcaccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacacacca------aaaacatttcttgcctacatgtacaaag |
295 |
Q |
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|||||||||||| ||||||||||| |||||| || | | |||||||||||||| ||||||| | | |||||| || ||||||||| ||| |||| |
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T |
8803216 |
tctagttttcacaaaaaagaagattaacaaactacattgttaggcttttgatatcagcacactctacatcctaaaacaatttttgcctacacgtagaaag |
8803117 |
T |
|
Q |
296 |
aataaatatcataatcactaacaacaattatatgctccataatcat |
341 |
Q |
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|| ||||||||||||| |||||| ||||||| ||||| |||||| |
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T |
8803116 |
catgaatatcataatcattaacaagaattatactctccacaatcat |
8803071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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