View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_88 (Length: 356)
Name: NF1390_low_88
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_88 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 48 - 286
Target Start/End: Complemental strand, 49080643 - 49080415
Alignment:
| Q |
48 |
tcacatacctccctctagtttcaaatatacaacaacctccccctcaagttaactctgttaacaatcctgtttacttcgaaacaaatccttctacaaatat |
147 |
Q |
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| T |
49080643 |
tcacatacctccctctagtttcaaatatacaacaacctccccctc----------tgttaactatcctgtttacttcgaagcaaatccttctacaaatat |
49080554 |
T |
|
| Q |
148 |
gatatattttcataacaatctaattcttgcaaccaattaagcatccaaccaaattcttcaatgatggcaataattagttttgcgttggtcagtgggagtg |
247 |
Q |
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| T |
49080553 |
gatatattttcataacaatctaattcttgcaaccaattaagcatccaaccaaattcttcaatgatggcactaattagttttgcgttggtcagtgggagtg |
49080454 |
T |
|
| Q |
248 |
taatctgcctattcttaacacttgtatttttcttcctat |
286 |
Q |
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| T |
49080453 |
taatctgcctattcttaacacttgtatttttcttcctat |
49080415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 58 - 229
Target Start/End: Original strand, 46444105 - 46444276
Alignment:
| Q |
58 |
ccctctagtttcaaatatacaacaacctccccctcaagttaactctgttaacaatcctgtttacttcgaaacaaatccttctacaaatatgatatatttt |
157 |
Q |
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||||||||||| ||||| ||| |||||||| | ||||||||||||||||| ||| ||||| ||| |||| |||||||||| |||| | ||||||||| |
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| T |
46444105 |
ccctctagtttggaatattcaataacctcccttttaagttaactctgttaactgtcccgtttagttccaaacgaatccttctagaaatctaatatatttt |
46444204 |
T |
|
| Q |
158 |
cataacaatctaattcttgcaaccaattaagcatccaaccaaattcttcaatgatggcaataattagttttg |
229 |
Q |
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| T |
46444205 |
catggcaacctagttattgcaaccaattaagcattcaaccaaattcttcaatgatgacaataatcagttttg |
46444276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 59 - 213
Target Start/End: Complemental strand, 31547896 - 31547742
Alignment:
| Q |
59 |
cctctagtttcaaatatacaacaacctccccctcaagttaactctgttaacaatcctgtttacttcgaaacaaatccttctacaaatatgatatattttc |
158 |
Q |
| |
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|||||||||||||||| ||| |||||| || | |||||||||| |||||| || |||||| ||| ||||||||||||||| |||| | |||||||||| |
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| T |
31547896 |
cctctagtttcaaataatcaataacctctcctt-aagttaactcggttaactattatgtttagttccaaacaaatccttctagaaatcttatatattttc |
31547798 |
T |
|
| Q |
159 |
ataacaatctaattcttgcaaccaatt-aagcatccaaccaaattcttcaatgatg |
213 |
Q |
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||| ||| |||||| ||||| |||||| ||| || | | ||||||||||||||||| |
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|
| T |
31547797 |
atagcaacctaattattgcagccaattaaagtattcgatcaaattcttcaatgatg |
31547742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 51292421 - 51292316
Alignment:
| Q |
114 |
ctgtttacttcgaaacaaatccttctacaaatatgatatattttcataacaatctaattcttgcaaccaattaagcatccaaccaaattcttcaatgatg |
213 |
Q |
| |
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||||||| ||| |||||||||||| || |||| ||||||||||||||| ||| |||||| | |||||||||||| || |||| || || |||||||||| |
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| T |
51292421 |
ctgtttagttccaaacaaatccttttaaaaatctgatatattttcatagcaacctaattttctcaaccaattaagaattcaacaaatttgttcaatgatg |
51292322 |
T |
|
| Q |
214 |
gcaata |
219 |
Q |
| |
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|||||| |
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|
| T |
51292321 |
gcaata |
51292316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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