View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_low_90 (Length: 354)
Name: NF1390_low_90
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1390_low_90 |
| |
|
[»] scaffold0175 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 167 - 325
Target Start/End: Complemental strand, 29276604 - 29276449
Alignment:
Q |
167 |
tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataatgacagaaaat-gccaagaattagtatatttttgtcaagnnnnnnnntaaat |
265 |
Q |
|
|
|||||||||| ||||||||||||||||||||||||||||||||||||| | | |||| |||||||||||| |||||| ||||| ||||| |
|
|
T |
29276604 |
tgaaatgtgtacattgtttgaaatcaaatattccatggattttgataacaaaaaaaaaaagccaagaattagcatattt--gtcaa--caaaaaataaat |
29276509 |
T |
|
Q |
266 |
aatgtgattcattcttgaaacattcattcttaatagaacagtagtgactataggttgttt |
325 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
T |
29276508 |
aatgtgattcattcttgaaacattcattcttaatagaaaagtggtgactataggttgttt |
29276449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 29276727 - 29276664
Alignment:
Q |
26 |
ttagcggtaagtatatgagacatttaggtaattatgatcttagcttagacttaaagttatgaca |
89 |
Q |
|
|
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
T |
29276727 |
ttagcagtaagtatttgagacatttaggtaattatgatcttagcttaaacttaaagtaatgaca |
29276664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 29276706 - 29276673
Alignment:
Q |
111 |
atttagataattatgatcttagcttaaacttaaa |
144 |
Q |
|
|
|||||| ||||||||||||||||||||||||||| |
|
|
T |
29276706 |
atttaggtaattatgatcttagcttaaacttaaa |
29276673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 325
Target Start/End: Original strand, 27647 - 27800
Alignment:
Q |
167 |
tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataatgacagaaaatgccaagaattagtatatttttgtcaagnnnnnnnntaaata |
266 |
Q |
|
|
|||||||||| ||||||||||||| ||||||| ||||||||||||||| ||| ||||| |||||||||||||| ||||||||| |||||| |
|
|
T |
27647 |
tgaaatgtgtacattgtttgaaataaaatatttcatggattttgataacaacaataaatgtcaagaattagtata--tttgtcaag--aaaaaataaata |
27742 |
T |
|
Q |
267 |
atgtgattcattcttgaaacattcattcttaatagaacagtagtgactataggttgttt |
325 |
Q |
|
|
|||||||||||||||||| |||||||||||||| || ||| ||||||||||||||||| |
|
|
T |
27743 |
gtgtgattcattcttgaaatattcattcttaata-aaaagtggtgactataggttgttt |
27800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 27528 - 27574
Alignment:
Q |
26 |
ttagcggtaagtatatgagacatttaggtaattatgatcttagctta |
72 |
Q |
|
|
||||| |||||||| ||||||||||||||| ||||||||||| |||| |
|
|
T |
27528 |
ttagcagtaagtatttgagacatttaggtagttatgatcttacctta |
27574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 325
Target Start/End: Original strand, 55857989 - 55858151
Alignment:
Q |
167 |
tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataatgacagaa--------aatgccaagaattagtatatttttgtcaagnnnnnn |
258 |
Q |
|
|
|||||||||| ||||||||||||||||||||||||||||||||||||| | | || || |||||||||||| |||||| ||||| |
|
|
T |
55857989 |
tgaaatgtgtacattgtttgaaatcaaatattccatggattttgataacaaaaaaataaaaataaaagccaagaattagcatattt--gtcaa--caaaa |
55858084 |
T |
|
Q |
259 |
nntaaataatgtgattcattcttgaaacattcattcttaatagaacagtagtgactataggttgttt |
325 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
T |
55858085 |
aataaataatgtgattcattcttgaaacattcattcttaatagaaaaatggtgactataggttgttt |
55858151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 55857866 - 55857932
Alignment:
Q |
26 |
ttagcggtaagtatatgagacatttaggtaattatgatcttagcttagacttaaagttatgacagcc |
92 |
Q |
|
|
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
T |
55857866 |
ttagcagtaagtatttgagacatttaggtaattatgatcttagcttaaacttaaagtaatgacagcc |
55857932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 55857887 - 55857920
Alignment:
Q |
111 |
atttagataattatgatcttagcttaaacttaaa |
144 |
Q |
|
|
|||||| ||||||||||||||||||||||||||| |
|
|
T |
55857887 |
atttaggtaattatgatcttagcttaaacttaaa |
55857920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 15844 times since January 2019
Visitors: 3757