View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_94 (Length: 350)
Name: NF1390_low_94
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_94 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 48 - 342
Target Start/End: Complemental strand, 3332156 - 3331862
Alignment:
| Q |
48 |
ctggaaataaacaggaggctggccaggtaagttagtcacaagatcatcattatcaccatagcttaatttcctatctttagaagaaacaataggattcaca |
147 |
Q |
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| T |
3332156 |
ctggaaataaacaggaggctggccaggtaagttagtcacaagatcatcattatcaccatagcttaatttcctatctttagaagaaacaataggattcaca |
3332057 |
T |
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| Q |
148 |
tgtaaaaacaacactatcaaagccaatgtgtagaaacttgtcatattatccaaagttttacttgatggacaaagagaaatactacatacctatttatact |
247 |
Q |
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| T |
3332056 |
tgtaaaaacaacactatcaaagccaatgtgtagaaacttgtcatattatccaaagttttacttgatggacaaagagaaatactacatacctatttatact |
3331957 |
T |
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| Q |
248 |
aatctaggactactatttaatggtccatcatagggtaaaaatttattaaaaagcagataggattagagagtcctacctggcaacatcttcatctc |
342 |
Q |
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| T |
3331956 |
aatctaggactactatttaatggtccatcatagggtaaaaattaatgaaaaagcagataggattagagagtcctacctggcaacatctttatctc |
3331862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 3338421 - 3338349
Alignment:
| Q |
112 |
aatttcctatctttagaagaaacaataggattcacatgtaaaaacaacactatcaaagccaatgtgtagaaac |
184 |
Q |
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|||||| ||||| ||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
3338421 |
aatttcttatctctagaagaaacaatagtattcatacataaaaacaatactatcaaagccaatgtgtagaaac |
3338349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 3338489 - 3338446
Alignment:
| Q |
62 |
gaggctggccaggtaagttagtcacaagatcatcattatcacca |
105 |
Q |
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|||||||||| ||||||||||||||||||||| | ||||||||| |
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| T |
3338489 |
gaggctggcctggtaagttagtcacaagatcacccttatcacca |
3338446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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