View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_95 (Length: 350)
Name: NF1390_low_95
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_95 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 29 - 343
Target Start/End: Complemental strand, 33951053 - 33950754
Alignment:
| Q |
29 |
accacccctcagaagctccattttcaacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttaaaaagt |
128 |
Q |
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| T |
33951053 |
accacccctcagaagctccattttcaacttgctaaatggtatatccaacccaacagtgaatttttgattttcaggaacattgaaaggacgcttgaaaagt |
33950954 |
T |
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| Q |
129 |
tgtccatcttcattgaatttgtgtacaaaattttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaa |
228 |
Q |
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| T |
33950953 |
tgtccatcttcattgaatt---------------catggttgagaagctcaagaatttctctggtcttataaagcgtctcttcaacatcatttacagtaa |
33950869 |
T |
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| Q |
229 |
gagattggttctcctcaacaacatagccataggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttat |
328 |
Q |
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| T |
33950868 |
gagattggttctcctcaacaacatagccataggaatcattctcagaagaacatgtacatgcactttctcctgcatcattttcttctatcagactatttat |
33950769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 338
Target Start/End: Complemental strand, 33990526 - 33990235
Alignment:
| Q |
41 |
aagctccattttcaacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttaaaaagttgtccatcttca |
140 |
Q |
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| T |
33990526 |
aagctccattttcaacttgctaaatggtatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttgaaaggtggtttagcttca |
33990427 |
T |
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| Q |
141 |
ttgaatttgtgtacaaaattttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttct |
240 |
Q |
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| T |
33990426 |
ttgaatttgtgttcaaaagtttcatagttgagaagctcaagaatttctctggccttataaagtgtctcttcaacatcatttacaataagagattggttct |
33990327 |
T |
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| Q |
241 |
cctcaacaacatagccataggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttatttcttctctg |
338 |
Q |
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| T |
33990326 |
catcaacaac------ataggaatcattctcagaagaacatttgcatgcactttcttctgcatcattttcttctaatagagtcttgatttcttctctg |
33990235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 158 - 343
Target Start/End: Complemental strand, 33959580 - 33959401
Alignment:
| Q |
158 |
attttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagcca |
257 |
Q |
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| T |
33959580 |
attttcgtggttgagaagctcaagaatttctcttggcttataaagtgtttcttcaacatcatttacaataagagattggttctcatcaacaacatag--- |
33959484 |
T |
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| Q |
258 |
taggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttatttcttctctgtggtg |
343 |
Q |
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| T |
33959483 |
---gaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctattagactatttatttcctctctggggtg |
33959401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 158 - 296
Target Start/End: Complemental strand, 33973582 - 33973450
Alignment:
| Q |
158 |
attttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagcca |
257 |
Q |
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| T |
33973582 |
attttcgtggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcatttacaataagagattggttctcatcaacaa------cg |
33973489 |
T |
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| Q |
258 |
taggaatcattctcagaagaacatttgcatgcactttct |
296 |
Q |
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| T |
33973488 |
taggaatcattctcaaaagaagatttgcatgcactttct |
33973450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 33973648 - 33973577
Alignment:
| Q |
29 |
accacccctcagaagctccattttcaacttgctaaatgctatatccaacccaacagtgaattttggattttc |
100 |
Q |
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| T |
33973648 |
accacccctcagaagctccattttcaacttgctaaatggtatatccaacccaacagtgaattttggattttc |
33973577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 254
Target Start/End: Complemental strand, 10556 - 10341
Alignment:
| Q |
42 |
agctccattttcaacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttaaaaa---gttgtccatctt |
138 |
Q |
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||||||||||||||||||||||||| |||||| | ||||||| |||||| ||||||||| |||||| | ||||||| ||| || | || |||||| || |
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| T |
10556 |
agctccattttcaacttgctaaatggtatatcaatcccaacaatgaattctggattttctggaacaccaaaaggacccttgaatattggtggtccatttt |
10457 |
T |
|
| Q |
139 |
cattgaatttgtgtacaaaattttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggtt |
238 |
Q |
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|||| ||||| ||| |||||||||| | | | ||||| |||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||||||| |
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| T |
10456 |
cattaaatttctgttcaaaattttccttgttaagaagttcaagaatttctctggccttgtaaagtgtctctttaacatcatttaccgtaagagattggtt |
10357 |
T |
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| Q |
239 |
ctcctcaacaacatag |
254 |
Q |
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|| ||||| |||||| |
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| T |
10356 |
atcatcaacgacatag |
10341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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