View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_96 (Length: 350)
Name: NF1390_low_96
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_96 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 33950530 - 33950869
Alignment:
| Q |
11 |
cacagacaggcaaaaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33950530 |
cacagacaggcaaaaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttaatgatgtcttgaa |
33950629 |
T |
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| Q |
111 |
caaaatatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950630 |
caaaatatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatata |
33950729 |
T |
|
| Q |
211 |
aagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgaga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
33950730 |
aagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgtacatgttcttctgaga |
33950829 |
T |
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| Q |
311 |
atgattcctatggctatgttgttgaggagaaccaatctct |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33950830 |
atgattcctatggctatgttgttgaggagaaccaatctct |
33950869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 33990013 - 33990339
Alignment:
| Q |
15 |
gacaggcaaaaacagaagaaggaatctcaaattcatgagtagcgc---tacacacattattacccttacaacaagatttcaatttcatgatgtcttgaac |
111 |
Q |
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| T |
33990013 |
gacaggcaaaagcagaggaaggaatctcaaattcatgagtagcgccactacacatattattacccttacaacaagattt------catgatgtcttgaac |
33990106 |
T |
|
| Q |
112 |
aaaatatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataa |
211 |
Q |
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|||||||||||||| || ||| ||||| |||| |||||||| |||||| || ||||||| |||||| ||||||||| ||| || || ||||| |||| |
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| T |
33990107 |
aaaatatctcaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataa |
33990206 |
T |
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| Q |
212 |
agcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaa |
311 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| || | ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33990207 |
agcaatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaa |
33990306 |
T |
|
| Q |
312 |
tgattcctatggctatgttgttgaggagaaccaatctct |
350 |
Q |
| |
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|||||| |||||||||||| |||||||||||||| |
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| T |
33990307 |
tgattc------ctatgttgttgatgagaaccaatctct |
33990339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 271
Target Start/End: Original strand, 33973227 - 33973454
Alignment:
| Q |
41 |
tcaaattcatgagtagcgctac---acacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagc |
137 |
Q |
| |
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||||||||||||||||||| || ||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||| || ||| ||| |
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| T |
33973227 |
tcaaattcatgagtagcgccacgacacatattattacccttacaacaagatttaa------tgatgtcttgaacaaaatatctgaaatagttgaaacagc |
33973320 |
T |
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| Q |
138 |
acaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcac |
237 |
Q |
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|| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
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| T |
33973321 |
acgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaatgaacacttggatcaa |
33973420 |
T |
|
| Q |
238 |
cccagagaagaaataaatagtctgatagaagaaa |
271 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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| T |
33973421 |
cccagagaagaaataaatagtttgatagaagaaa |
33973454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 180 - 350
Target Start/End: Original strand, 33959346 - 33959510
Alignment:
| Q |
180 |
aaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgca |
279 |
Q |
| |
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||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
33959346 |
aaaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccagagaggaaataaatagtctaatagaagaaaatgatgca |
33959445 |
T |
|
| Q |
280 |
ggagaaagtgcatgcaaatgttcttctgagaatgattcctatggctatgttgttgaggagaaccaatctct |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
33959446 |
ggagaaagtgcatgcaaatgttcttctgagaatgattc------ctatgttgttgatgagaaccaatctct |
33959510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 33959247 - 33959349
Alignment:
| Q |
42 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagcacaa |
141 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
33959247 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaatacttcaaaaagcacga |
33959346 |
T |
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| Q |
142 |
aag |
144 |
Q |
| |
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||| |
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| T |
33959347 |
aag |
33959349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 33973450 - 33973488
Alignment:
| Q |
282 |
agaaagtgcatgcaaatgttcttctgagaatgattccta |
320 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||| |
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| T |
33973450 |
agaaagtgcatgcaaatcttcttttgagaatgattccta |
33973488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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