View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503-Insertion-11 (Length: 346)
Name: NF1503-Insertion-11
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503-Insertion-11 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 4600097 - 4599762
Alignment:
| Q |
7 |
acttctttctcatgcagctgctgtcgaattgtataaaaccaaatatcaggtgcaacactaaaaattagtaatagataacnnnnnnngttatgattgttca |
106 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4600097 |
acttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgcaacactaaaaattagtaatagataactttttttgttatgattgttca |
4599998 |
T |
|
| Q |
107 |
aaaatttacttatcttcaattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagaccc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4599997 |
aaaatttacttatcttcaattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagaccc |
4599898 |
T |
|
| Q |
207 |
attagatcaacaagccaccgaacgcgcccttgatttcatgtttggatggtaatgactatacnnnnnnnaccgtttctacgacaaccatggatcgcgacaa |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||| |
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| T |
4599897 |
attagatcaacaagccaccgaacgcgcccttgatttcatgtttggatggtaatgac--tactttttttaccttttctacgacaaccatggatcacgacaa |
4599800 |
T |
|
| Q |
307 |
aattgtgacggtaatttaaaatcttctttatctgtttg |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4599799 |
aattgtgacggtaatttaaaatcttctttatctgtttg |
4599762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 143 - 344
Target Start/End: Complemental strand, 4624295 - 4624093
Alignment:
| Q |
143 |
ctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagccaccgaacgcgcccttgattt |
242 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| | ||| |||||||||||| |
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| T |
4624295 |
ctcaaaatggtgtaataggcattggattaaactctcactggtttaaaccatactcaactgacccattagatcaaaaagccgctgaagacgcccttgattt |
4624196 |
T |
|
| Q |
243 |
catgtttggatggtaatgactatacnnnnnnnaccgtttctacgacaaccatggatcgcgacaaaattgtgacgg--taatttaaaatcttctttatctg |
340 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
4624195 |
catgtttggatggtaacaactatac-tttttgaccgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataatttaaaatcttctttatctg |
4624097 |
T |
|
| Q |
341 |
tttg |
344 |
Q |
| |
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|||| |
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| T |
4624096 |
tttg |
4624093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 25017429 - 25017293
Alignment:
| Q |
124 |
aattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagcca |
223 |
Q |
| |
|
||||||||| ||||| ||||||||| ||| ||||||||| | |||| ||||||||||||| |||| ||||| || |||||||||| ||||| |
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| T |
25017429 |
aattaatggcagcagtcttctcaaaatggttcaataggcatcagcttaagctctcactggtttctgccgttctcaaatcacacattagatcatcaagctg |
25017330 |
T |
|
| Q |
224 |
ccgaacgcgcccttgatttcatgtttggatggtaatg |
260 |
Q |
| |
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||||||| || ||||||| |||||||||||||||||| |
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|
| T |
25017329 |
ccgaacgtgctcttgattacatgtttggatggtaatg |
25017293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 257
Target Start/End: Complemental strand, 25038530 - 25038397
Alignment:
| Q |
124 |
aattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagcca |
223 |
Q |
| |
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||||||||| | |||| ||||||||| ||| ||||||||| ||||| | |||||||||| |||| ||||| ||| | |||||||| ||||| |
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| T |
25038530 |
aattaatggcatcaggcttctcaaaatggttcaataggcatcaccttaaattgtcactggtttttgccgttctcaaatgacacgttagatcatcaagctt |
25038431 |
T |
|
| Q |
224 |
ccgaacgcgcccttgatttcatgtttggatggta |
257 |
Q |
| |
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||||||| || ||||||||||||||||||||||| |
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| T |
25038430 |
ccgaacgtgctcttgatttcatgtttggatggta |
25038397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 4624345 - 4624296
Alignment:
| Q |
7 |
acttctttctcatgcagctgctgtcgaattgtataaaaccaaatatcagg |
56 |
Q |
| |
|
||||||| ||||||||| || | |||||||||||||||||| |||||||| |
|
|
| T |
4624345 |
acttcttgctcatgcagatgttttcgaattgtataaaaccacatatcagg |
4624296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 18804224 - 18804269
Alignment:
| Q |
15 |
ctcatgcagctgctgtcgaattgtataaaaccaaatatcaggtgca |
60 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || ||||||||||| |
|
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| T |
18804224 |
ctcatgcagctgctgtcaaattgtataaaacaaattatcaggtgca |
18804269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 266
Target Start/End: Original strand, 18804346 - 18804486
Alignment:
| Q |
126 |
ttaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagccacc |
225 |
Q |
| |
|
||||||| |||||| ||||||||| ||| |||||||||| |||||||| | ||||||| ||| | ||| |||| |||||||| ||||| || |
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| T |
18804346 |
ttaatggaagcaggcttctcaaaagggtataataggcatcacattaaactgtacctggtttttgccgcaatcagataacccgttagatcatcaagctgcc |
18804445 |
T |
|
| Q |
226 |
gaacgcgcccttgatttcatgtttggatggtaatgactata |
266 |
Q |
| |
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||||| ||||||||||| || ||||||||||||||||||| |
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| T |
18804446 |
gaacgtgcccttgatttattgcttggatggtaatgactata |
18804486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 18804667 - 18804717
Alignment:
| Q |
294 |
tggatcgcgacaaaattgtgacggtaatttaaaatcttctttatctgtttg |
344 |
Q |
| |
|
|||||| ||||| ||||| | | |||||||||||||||||||||||||||| |
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|
| T |
18804667 |
tggatcacgacataattgcggcagtaatttaaaatcttctttatctgtttg |
18804717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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