View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503-Insertion-12 (Length: 332)
Name: NF1503-Insertion-12
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503-Insertion-12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 35417100 - 35417424
Alignment:
| Q |
8 |
acgagctcaaccgcggaggaaatgagagcacgggcatgtccaattgccggaaaaccattaactgtgctgaagttgcaagaaacataaacaggaacaaaga |
107 |
Q |
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| T |
35417100 |
acgagctcaaccgcggaggaaatgagagcacgggcatgtccaattgccggaaaaccattaactgtgctgaagttgcaagaaacataaacaggaacaaaga |
35417199 |
T |
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| Q |
108 |
agaaatcagtttcataagggtcaaaagttctcacatcacttttcaacaatgcggtgtgaatagcaacttctgaagcaaacaaatgtgttttacacctccc |
207 |
Q |
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| T |
35417200 |
agaaatcagcttcataagggtcaaaagttctcacatcacttttcaacaatgcggtgtgaatagcaacttctgaagcaaacaaatgtgttttacacctccc |
35417299 |
T |
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| Q |
208 |
atttacaagccaatcattgttgtattttgaaggtagctcataaacaaacaccttcaaatttttcaacatatctaatgagttatgagaaacaatgttggaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35417300 |
atttacaagccaatcattgttgtattttgaaggtagctcataaacaaacaccttcaaatttttcaacatatctaatgagttatgagaaacaacgttggaa |
35417399 |
T |
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| Q |
308 |
ttagaatttgagacaatggttgtta |
332 |
Q |
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| T |
35417400 |
ttagaatttgagacaatggttgtta |
35417424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 12172803 - 12172910
Alignment:
| Q |
41 |
gcatgtccaattgccggaaaaccattaactgtgctgaagttgcaagaaacataaacaggaacaaagaagaaatcagtttcataagggtcaaaagttctca |
140 |
Q |
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| T |
12172803 |
gcatgaccaattgcagggaagccattaacagtgctgaagttacaagaaacataaattgctacaaagaaaaaatcagcttcgtaagggtcaaaagttctaa |
12172902 |
T |
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| Q |
141 |
catcactt |
148 |
Q |
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|||||||| |
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| T |
12172903 |
catcactt |
12172910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 21056178 - 21056021
Alignment:
| Q |
41 |
gcatgtccaattgccggaaaaccattaactgtgctgaagttgcaagaaacataaacaggaacaaagaagaaatcagtttcataagggtcaaaagttctca |
140 |
Q |
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||||| |||||||| || || |||||||| ||||||||||| |||||||| ||||| || |||||||| ||||||| |||||| |||||||||||||| | |
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| T |
21056178 |
gcatgaccaattgctgggaagccattaacggtgctgaagttacaagaaacgtaaactggtacaaagaaaaaatcagcttcatatgggtcaaaagttctta |
21056079 |
T |
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| Q |
141 |
catcacttttcaacaatgcggtgtgaatagcaacttctgaagcaaacaaatgtgtttt |
198 |
Q |
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|||||||| | || || || | ||||||||||||||||||||||| ||||| ||||| |
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| T |
21056078 |
catcacttgttaataaagctctatgaatagcaacttctgaagcaaataaatgagtttt |
21056021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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