View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503-Insertion-13 (Length: 323)
Name: NF1503-Insertion-13
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503-Insertion-13 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 4648536 - 4648876
Alignment:
| Q |
7 |
acaagaatccggctcatacgtctcattaaatattttattcgaattgaataggatttctttttcttaaagttgttttattcgaagnnnnnnnnctacaaga |
106 |
Q |
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| T |
4648536 |
acaagaatccggctcatacgtctcattaaatattttattcgaattgaataggatttctttttcttaaagttgttttattcgaagaaaaaaaactacaaga |
4648635 |
T |
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| Q |
107 |
cgaagagtagaaacttcactaacaacaactaatataacaatcgataaggagtaaaaactcaagtaa--actaagaatcctcactatcatatctcatatct |
204 |
Q |
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| T |
4648636 |
cgaagagtagaaacttcactaacaacaactaatataacaatcgataaggagtaaaaactcaagtaaacactaagaatcctcactatcatatctcatatct |
4648735 |
T |
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| Q |
205 |
attcgaacccgatt----------------------atcacaaaagttcttaaaaacttgttatatcttttaatgaagagactcatctctttatcacttg |
282 |
Q |
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| T |
4648736 |
attcgaacccgattatctatatgtcatgtgcctttcatcacaaaagttcttaaaaacttgttatatcttttaatgaagagactcatctctttatcacttg |
4648835 |
T |
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| Q |
283 |
agacatcattgttatcactatttctccttgtcctttgtcca |
323 |
Q |
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| T |
4648836 |
agacatcattgttatcactatttctccttgtcctttgtcca |
4648876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 23692894 - 23692816
Alignment:
| Q |
230 |
tcttaaaaacttgttatatcttttaatgaagagactcatctctttatcacttgagacatcattgttatcactatttctc |
308 |
Q |
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|||||| || ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
23692894 |
tcttaagaatttgttatatctattaatgaagagactcacctctttatcacttgagacatcatcgttatcactatttctc |
23692816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 23697013 - 23697051
Alignment:
| Q |
44 |
ttcgaattgaataggatttctttttcttaaagttgtttt |
82 |
Q |
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| T |
23697013 |
ttcgaattgaataggatttctttttcttaaagttgtttt |
23697051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 4648454 - 4648416
Alignment:
| Q |
44 |
ttcgaattgaataggatttctttttcttaaagttgtttt |
82 |
Q |
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| T |
4648454 |
ttcgaattgaataggatttcttttacttaaagttgtttt |
4648416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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