View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503-Insertion-15 (Length: 217)
Name: NF1503-Insertion-15
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503-Insertion-15 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 14305001 - 14304797
Alignment:
| Q |
8 |
atattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccgatgtagtag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14305001 |
atattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccgatgtagtag |
14304902 |
T |
|
| Q |
108 |
caacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagggtggttttggctgaatcctttactcaa |
207 |
Q |
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| T |
14304901 |
ccacatatccatcgatttcaatcgatagaactttgagtccttatgcccattcttcatttttgtccaaaacagggtggttttggctgaatcctttactcaa |
14304802 |
T |
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| Q |
208 |
caaag |
212 |
Q |
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|||| |
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| T |
14304801 |
taaag |
14304797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 14283243 - 14283050
Alignment:
| Q |
8 |
atattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccgatgtagtag |
107 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14283243 |
atattctctttggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccgatgtagtag |
14283144 |
T |
|
| Q |
108 |
caacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagggtggttttggctgaatccttt |
201 |
Q |
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| T |
14283143 |
caacatatccatcagtttccaccgatagaactttgagtccttatgcctgttcttcagttttgtccaaaacagtttggtattggatgaacccttt |
14283050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 14321392 - 14321188
Alignment:
| Q |
8 |
atattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccgatgtagtag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14321392 |
atattctcattggttaatcttccattatctgtgttcttttttgtgatatccgtaaaagggtcatcaggtattcacgtgataagaatatccgatgtagtag |
14321293 |
T |
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| Q |
108 |
caacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagggtggttttggctgaatcctttactcaa |
207 |
Q |
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||||||||| || ||||| | |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
14321292 |
caacatatcggtcaatttcgaccgatagaactttgagtccttatgcttgttcgtcatttttgtctaaaacagggtggttttggatgaaccctttactcaa |
14321193 |
T |
|
| Q |
208 |
caaag |
212 |
Q |
| |
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|||| |
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|
| T |
14321192 |
taaag |
14321188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 25886074 - 25885881
Alignment:
| Q |
8 |
atattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccgatgtagtag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25886074 |
atattctcattggttaatcttccattatctttgttcttttttgtcatatccattagagggtcatcagggattcatgtgataagaatatccgatgtagtag |
25885975 |
T |
|
| Q |
108 |
caacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagggtggttttggctgaatccttt |
201 |
Q |
| |
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| |||||| ||||| || ||| ||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| ||||| |
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| T |
25885974 |
cgacatatacatcggttccaactgatggaaatttgagtccttatgctggttcttcatttttgtccaaaacagtttggttttggatgaacccttt |
25885881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 44349918 - 44349725
Alignment:
| Q |
8 |
atattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccgatgtagtag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
44349918 |
atattctcattggttaatcttccattatctgcgttcttttttgtcatatccattagagggtcatcagggattcttgtgataagaatatccgatgtagtag |
44349819 |
T |
|
| Q |
108 |
caacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagggtggttttggctgaatccttt |
201 |
Q |
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| |||||| |||| || | | ||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| ||||| |
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| T |
44349818 |
cgacatatacatcagttccgactgatggaaatttgagtccttatgctggttcttcatttttgtccaaaacagtttggttttggatgaacccttt |
44349725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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