View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503-Insertion-16 (Length: 190)
Name: NF1503-Insertion-16
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503-Insertion-16 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 8314619 - 8314743
Alignment:
| Q |
7 |
aatcaagactaaaccaagaactgggttttcgaaaatccatgaatctgcaacgcttcaaaatcgattgatagacacggttcaaaatcaaggaaggatggga |
106 |
Q |
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| T |
8314619 |
aatcaagaataaacgaagaactaggttttcgaaaatccatgaatctacaacggttcaaaatcgattgatagacacggttcaaaatcaaggaaggatggga |
8314718 |
T |
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| Q |
107 |
gaaaagatgagagatcgataaaagg |
131 |
Q |
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| T |
8314719 |
gaaaagatgagagatcgataaaagg |
8314743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 39691523 - 39691647
Alignment:
| Q |
7 |
aatcaagactaaaccaagaactgggttttcgaaaatccatgaatctgcaacgcttcaaaatcgattgatagacacggttcaaaatcaaggaaggatggga |
106 |
Q |
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| T |
39691523 |
aatcaagaataaacgaagaagtggattttcgaaaatctatgaatctacaacggttcaaaatcgattgatagacacggttcaaaatcaaggaaggatggga |
39691622 |
T |
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| Q |
107 |
gaaaagatgagagatcgataaaagg |
131 |
Q |
| |
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| T |
39691623 |
gaaaagatgagagatcgataaaagg |
39691647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 33086089 - 33086044
Alignment:
| Q |
86 |
caaaatcaaggaaggatgggagaaaagatgagagatcgataaaagg |
131 |
Q |
| |
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|
| T |
33086089 |
caaaatcaaggaaggatgggagaaaagatgagagatcgataaaagg |
33086044 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 15443431 - 15443482
Alignment:
| Q |
80 |
acggttcaaaatcaaggaaggatgggagaaaagatgagagatcgataaaagg |
131 |
Q |
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|
| T |
15443431 |
acggttcaaaatcaaggaaggatgggagaaaagatgagagatcgataaaagg |
15443482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 15443382 - 15443443
Alignment:
| Q |
7 |
aatcaagactaaaccaagaactgggttttcgaaaatccatgaatctgcaacgcttcaaaatc |
68 |
Q |
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| T |
15443382 |
aatcaagaataaacgaagaactgggttttcgaaaatccatgaatctgcaacggttcaaaatc |
15443443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 15043092 - 15043014
Alignment:
| Q |
36 |
cgaaaatccatgaatctgcaacgcttcaaaatcgattgatagacacggttcaaaatcaaggaaggatgggagaaaagat |
114 |
Q |
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|||||||| ||||||||||||| ||||||||| | | | |||||| ||||||||||||||||||||| |||||||||| |
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| T |
15043092 |
cgaaaatctatgaatctgcaacagttcaaaatcaagtaacagacaccgttcaaaatcaaggaaggatgtgagaaaagat |
15043014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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