View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503-Insertion-2 (Length: 543)
Name: NF1503-Insertion-2
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503-Insertion-2 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] scaffold0090 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 7 - 543
Target Start/End: Original strand, 486917 - 487453
Alignment:
| Q |
7 |
agtgttagcttcaccttcacttcctgcaaatattctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgctttt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
486917 |
agtgttagcttcaccttcacttcctgcaaatattctggccattccaaagtctgaaatctttgggttcatgtcattgtccaataacacattacttgctttt |
487016 |
T |
|
| Q |
107 |
agatctctatgtattatttgaagtctagaatcttcatgaagataaagaattccccttgctattccatttattatatcaagccgcttcgtccaatccaact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
487017 |
agatctctatgtattatttgaagtctagaatcttcatgaagataaagaattccccttgctattccatttattatatcaagccgcttcgtccaatccaact |
487116 |
T |
|
| Q |
207 |
gtgcatgttgttctggatcaataaaaatgtaaatgtgaaatgacctaaaacttgtagaatgaatgaatgttgcaatcaatttattcatcaaatactaggt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
487117 |
gtgcatgttgttctggatcaataaaaatgtaaatgtgaaatgacctaaaacttgtagaatgaatgaatgttgcaatcaatttattcatcaaatactaggt |
487216 |
T |
|
| Q |
307 |
ctagcacaactggttgatgcacaatatgttggtgaatgttgtaaatataggagtactagtttgaatcttactcaaaaataaataccataccatccttaag |
406 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
487217 |
ctagcacaactggttgattcacaatatgtcggtgaatgttgtaaatataggagtactagtttgattcttactcaaaaataaataccataccatccttaag |
487316 |
T |
|
| Q |
407 |
aacgacaaaaatttggaatatactacttaccgaaaaggacaacatcaagactaccattgggcaaatattcatatacaagaagcttctcttctccatccac |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
487317 |
aacgacaaaaatttggaatatactacttaccgaaaaggacaacatcaagactaccattgggcaaatattcatatacaagaagcttctcttctccatccac |
487416 |
T |
|
| Q |
507 |
acaaaatcccaaaagttttacaagatttttgtgttga |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
487417 |
acaaaatcccaaaagttttacaagatttttgtgttga |
487453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 22689341 - 22689458
Alignment:
| Q |
38 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
137 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| ||||| |||||||| | ||| | ||| ||||| |||||||| |||||||| ||| | | |||||| |
|
|
| T |
22689341 |
attctagccatgccaaaatctgaaatctttggattcatatcattgtctactaaaatattgcttgcctttagatccctatgtatgattcttaatatagaat |
22689440 |
T |
|
| Q |
138 |
cttcatgaagataaagaa |
155 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
22689441 |
cttgatgaagataaagaa |
22689458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 40126025 - 40126087
Alignment:
| Q |
89 |
aacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataa |
151 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||| |||| || ||| || ||||||||||||||| |
|
|
| T |
40126025 |
aacacattacttgcctttatatccctatgtatgattttaattcttgactcttcatgaagataa |
40126087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 28433242 - 28433121
Alignment:
| Q |
38 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
137 |
Q |
| |
|
||||| ||||| ||||| |||||||| || || | ||| |||||||| | ||| | ||||||||| ||||||||||| ||||| || | |||||||| |
|
|
| T |
28433242 |
attctagccatgccaaaatctgaaattttaggatccatttcattgtctagtaaaatattacttgcctttagatctctgtgtatgatccttaatctagaat |
28433143 |
T |
|
| Q |
138 |
cttcatgaagataaagaattcc |
159 |
Q |
| |
|
||| ||||||||| ||||||| |
|
|
| T |
28433142 |
cttgatgaagatattgaattcc |
28433121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 8284 - 8401
Alignment:
| Q |
38 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
137 |
Q |
| |
|
||||| ||||| ||||| |||||||| || || ||||| |||| ||||||||| | |||||| |||| |||||||| ||||| ||| | | ||| |||| |
|
|
| T |
8284 |
attctagccatgccaaaatctgaaattttgggattcatatcatcgtccaataaaatattactcactttcagatctctgtgtatgattcgtaatcttgaat |
8383 |
T |
|
| Q |
138 |
cttcatgaagataaagaa |
155 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
8384 |
cttgatgaagataaagaa |
8401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 1077416 - 1077314
Alignment:
| Q |
50 |
ccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagat |
149 |
Q |
| |
|
||||| ||||| || ||||| ||||| |||||||| ||||| | |||||||| ||||||||||| |||||| || | ||||||||||| |||||||| |
|
|
| T |
1077416 |
ccaaaatctgatatttttggattcatatcattgtctaataaaatattacttggttttagatctcgatgtatgatcctcaatctagaatcttgatgaagat |
1077317 |
T |
|
| Q |
150 |
aaa |
152 |
Q |
| |
|
||| |
|
|
| T |
1077316 |
aaa |
1077314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 4548064 - 4548122
Alignment:
| Q |
92 |
acattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagata |
150 |
Q |
| |
|
||||||||||||||||| |||||||| |||| | ||||||||| |||||||||||||| |
|
|
| T |
4548064 |
acattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaagata |
4548122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 3080467 - 3080412
Alignment:
| Q |
92 |
acattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaag |
147 |
Q |
| |
|
||||||||||||||||| |||||||| |||| | ||||||||| ||||||||||| |
|
|
| T |
3080467 |
acattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaag |
3080412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 3094904 - 3094846
Alignment:
| Q |
92 |
acattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagata |
150 |
Q |
| |
|
||||||||||||||||| |||||||| |||| | |||||||| |||||||||||||| |
|
|
| T |
3094904 |
acattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagata |
3094846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 1050492 - 1050411
Alignment:
| Q |
71 |
ttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataaa |
152 |
Q |
| |
|
||||| |||||||| ||||| | |||||||| ||||||||||| |||||| || | ||||||||||| ||||||||||| |
|
|
| T |
1050492 |
ttcatatcattgtctaataaaatattacttggttttagatctcgatgtatgatccttaatctagaatcttgatgaagataaa |
1050411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 1091235 - 1091154
Alignment:
| Q |
71 |
ttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataaa |
152 |
Q |
| |
|
||||| |||||||| ||||| | |||||||| ||||||||||| |||||| || | ||||||||||| ||||||||||| |
|
|
| T |
1091235 |
ttcatatcattgtctaataaaatattacttggttttagatctcgatgtatgatcctcaatctagaatcttgatgaagataaa |
1091154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 47584404 - 47584283
Alignment:
| Q |
38 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
137 |
Q |
| |
|
||||| ||||| ||||| ||||| || ||||| ||||||| | | || ||||| ||||| || | ||| ||||| | ||||||||||| || | ||||| |
|
|
| T |
47584404 |
attctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgagaat |
47584305 |
T |
|
| Q |
138 |
cttcatgaagataaagaattcc |
159 |
Q |
| |
|
||||||| || ||||||||||| |
|
|
| T |
47584304 |
cttcatggaggtaaagaattcc |
47584283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9286 times since January 2019
Visitors: 7893