View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503-Insertion-22 (Length: 104)
Name: NF1503-Insertion-22
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503-Insertion-22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 5e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 5e-44
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 56241002 - 56240905
Alignment:
| Q |
7 |
aaagaaaaggtggacgaggttgtcagaatcaaacacaagcaggaggaagataagtcacaagtcacacttcattcatttcagttagtaatagtatacta |
104 |
Q |
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| T |
56241002 |
aaagaaaaggtggacaaggttgtcagaatcaaacacaagcaggaggaagataaggcacaagtcacacttcattcatttcagttagtaatagtatacta |
56240905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 23947296 - 23947210
Alignment:
| Q |
7 |
aaagaaaaggtggacgaggttgtcagaatcaaacacaagcaggaggaagataagtcacaagtcacacttcattcatttcagttagta |
93 |
Q |
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| T |
23947296 |
aaagaaaaggtggaggaggttgtcagaatcaaacagaagcaggaggaagataaggcacaagtcagacttcattcatttcagttagta |
23947210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 16105648 - 16105734
Alignment:
| Q |
7 |
aaagaaaaggtggacgaggttgtcagaatcaaacacaagcaggaggaagataagtcacaagtcacacttcattcatttcagttagta |
93 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
16105648 |
aaagaaaaggtggaggaggttgtcagaatcaaacagaagcaggaggaagataaggcacaagtcagacttcattcatttcagttagta |
16105734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 16623911 - 16623986
Alignment:
| Q |
9 |
agaaaaggtggacgaggttgtcagaatcaaacacaagcaggaggaagataagtcacaagtcacacttcattcattt |
84 |
Q |
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|||||||||||| ||||||| ||||||||||| |||||||| ||||| ||| | |||||| || |||||||||| |
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| T |
16623911 |
agaaaaggtggagaaggttgtgagaatcaaacagaagcaggaagaagacaaggcgaaagtcaaacatcattcattt |
16623986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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