View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503-Insertion-3 (Length: 575)
Name: NF1503-Insertion-3
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503-Insertion-3 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 49 - 575
Target Start/End: Original strand, 14231507 - 14232033
Alignment:
| Q |
49 |
ttcaaatcatcacgatcacattcatttctcctataactatgattcttattgtaaaaattcaaatcatcatcttcattaacccaaacaccacgatcatact |
148 |
Q |
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| T |
14231507 |
ttcaaatcatcatgatcacattcatttctcttataactatgattcttattataaaagttcaaatcatcatcttcattaacccaaacaccacgatcatact |
14231606 |
T |
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| Q |
149 |
cttttcttgaaccatcatcactcaaacactgaaaagcattagaaactttcttaaatgcgtcttccgaacccggtgctttattcttatcaggatgaacttt |
248 |
Q |
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| T |
14231607 |
cttttcttgaaccatcatcactcaaacactgaaaagcattagaaactttcttaaatgcgtcttccgaacccggtgctttattcttatcaggatgaacttt |
14231706 |
T |
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| Q |
249 |
caaagataatttcttataagcttttttaatctcttcaatagaacaactcttctctatccctaaaatcatatagtaatcatcttcccatataatttctcta |
348 |
Q |
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| T |
14231707 |
caaagataatttcttataagcttttctaatctcttcaatagaacaactcttctctaaccctaaaatcatatagtaatcatcttcccataaaatttctcta |
14231806 |
T |
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| Q |
349 |
atcaaattaacattcttttccatgtaannnnnnncacctttcaaaccattctctttcatgattcttaccggcctttccttcgcaggcaccttatgcaagg |
448 |
Q |
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| T |
14231807 |
atcaaattaacattcttttccatgtaattcttttcacctttcaaaccattctctttcatgattcttaccggcctttccttcgcaggcaccttaggcaagg |
14231906 |
T |
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| Q |
449 |
gtggtgggttagagcctcttgtggaagaagcggaagactgtgatttgagtcgttcgcatctggctaacaaggaatcaagaggtagatcgcggttgaggcg |
548 |
Q |
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| T |
14231907 |
gtggtgggttagagcctcttgtggaagaagcagaagactgtgatttgagtcgttcgcatttggctaacaaggaatcaagaggtagatcgcggttgaggcg |
14232006 |
T |
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| Q |
549 |
ctgagcgatcttgatgaatttgagagc |
575 |
Q |
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| T |
14232007 |
ctgagcgatcttgatgaatttgagagc |
14232033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 160 - 364
Target Start/End: Original strand, 14228005 - 14228209
Alignment:
| Q |
160 |
ccatcatcactcaaacactgaaaagcattagaaactttcttaaatgcgtcttccgaacccggtgctttattcttatcaggatgaactttcaaagataatt |
259 |
Q |
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| T |
14228005 |
ccatcatcactcaaacacttaaaagccttagaaactttcttaaacgcatcttcggaacccggtgctttattcttatcaggatgaactttcaaagacaatt |
14228104 |
T |
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| Q |
260 |
tcttataagcttttttaatctcttcaatagaacaactcttctctatccctaaaatcatatagtaatcatcttcccatataatttctctaatcaaattaac |
359 |
Q |
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| T |
14228105 |
tcctataagctttcctaatctcttcaacagaacaactcttctctaaccctaaaatcgaataataatcacttttccctttaatttccctaatcaacttaac |
14228204 |
T |
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| Q |
360 |
attct |
364 |
Q |
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| T |
14228205 |
attct |
14228209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 500 - 575
Target Start/End: Original strand, 14228327 - 14228402
Alignment:
| Q |
500 |
gttcgcatctggctaacaaggaatcaagaggtagatcgcggttgaggcgctgagcgatcttgatgaatttgagagc |
575 |
Q |
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| T |
14228327 |
gttcgcatttggcgaagagggaatcgagtggtaaatcgtggttgaggcgttgagcgattttgatgaatttgagagc |
14228402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 14231448 - 14231487
Alignment:
| Q |
8 |
gatcaaattcatcttcgcaagtatcatccttcctcccaaa |
47 |
Q |
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| T |
14231448 |
gatcaaattcatcttcgcaagtatcatccctcctcccaaa |
14231487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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