View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503-Insertion-4 (Length: 474)

Name: NF1503-Insertion-4
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503-Insertion-4
NF1503-Insertion-4
[»] chr5 (7 HSPs)
chr5 (186-470)||(43240519-43240803)
chr5 (251-470)||(38927762-38927979)
chr5 (36-166)||(43239796-43239927)
chr5 (187-258)||(38928005-38928075)
chr5 (38-109)||(43246527-43246598)
chr5 (38-109)||(43252992-43253063)
chr5 (270-339)||(21115189-21115258)
[»] chr7 (2 HSPs)
chr7 (251-470)||(3570819-3571036)
chr7 (187-258)||(3571062-3571132)
[»] chr1 (2 HSPs)
chr1 (265-470)||(46354188-46354391)
chr1 (187-258)||(46354434-46354505)
[»] scaffold0039 (1 HSPs)
scaffold0039 (260-352)||(80963-81059)
[»] chr8 (1 HSPs)
chr8 (270-339)||(43651982-43652051)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 186 - 470
Target Start/End: Original strand, 43240519 - 43240803
Alignment:
Q  186 actttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcactttctgaagtttaattgataatcataaagt 285  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43240519 actttcaatttgttattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcactttctgaagtttaattgataatcataaagt 43240618  T
Q  286 aaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttctgagttttattgccactataaacttggtgggtgc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43240619 aaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttctgagtattattgccactataaacttggtgggtgc 43240718  T
Q  386 aacatctaattatacttgcggaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatg 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43240719 aacatctaattatacttgcggaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatg 43240803  T

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Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 251 - 470
Target Start/End: Complemental strand, 38927979 - 38927762
Alignment:
Q  251 tgcactttctgaagtttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatactt 350  Q
    ||||||||  ||| ||||||| ||||||||||||| ||||| | ||||| |   ||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  38927979 tgcacttttggaattttaattcataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtactccaaatatactt 38927883  T
Q  351 ct--gagttttattgccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctattcatctctattgtaccatcattaattatta 448  Q
    ||  || ||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||  ||||||||||| ||||||||||| |||    
T  38927882 ctatgaatttcattgccactataaacttggtgtgtgcaatatctaattatacttgcagaatttcggatatttttctctattgta-catcattaattttta 38927784  T
Q  449 agtcagattatacacttttatg 470  Q
    ||||||||||||||||||||||    
T  38927783 agtcagattatacacttttatg 38927762  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 43239796 - 43239927
Alignment:
Q  36 aggaaggcgctatatcaagccaattcttttacagcgaaaccataacgaataatgtgcgaggcaatttttgttgc-nnnnnnnnnnccttctttcattctt 134  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||    
T  43239796 aggaaggcgctatatcaagccaattcttttaaagcgaaaccataacgaataatgtgcgaggcaatttttgttgctcttttttttttcttctttcattctt 43239895  T
Q  135 ttgttgtagtattatctataatctatatctat 166  Q
    ||||||||||||||||||||||||||| ||||    
T  43239896 ttgttgtagtattatctataatctataactat 43239927  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 38928075 - 38928005
Alignment:
Q  187 ctttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcacttt 258  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  38928075 ctttcaatttgctattttttatgtaatgaaaaggactttcatcagttac-caccacaaatgccttgcacttt 38928005  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 43246527 - 43246598
Alignment:
Q  38 gaaggcgctatatcaagccaattcttttacagcgaaaccataacgaataatgtgcgaggcaatttttgttgc 109  Q
    ||||| |||||||||| || |||||||||||  ||||||||| ||||||||||| |||| ||||||||||||    
T  43246527 gaaggtgctatatcaacccgattcttttacaatgaaaccatagcgaataatgtgtgaggaaatttttgttgc 43246598  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 43252992 - 43253063
Alignment:
Q  38 gaaggcgctatatcaagccaattcttttacagcgaaaccataacgaataatgtgcgaggcaatttttgttgc 109  Q
    ||||| |||||||||| || |||||||||||  ||||||||| ||||||||||| |||| ||||||||||||    
T  43252992 gaaggtgctatatcaacccgattcttttacaatgaaaccatagcgaataatgtgtgaggaaatttttgttgc 43253063  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 21115258 - 21115189
Alignment:
Q  270 ttgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactc 339  Q
    ||||||||||||||| ||| ||||  |  |||||| |||||||  ||||| |||||||||||||||||||    
T  21115258 ttgataatcataaagaaaatttttgttgtgataatgattgggtgagaaaaatgtaaaactaatagtactc 21115189  T

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Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 251 - 470
Target Start/End: Complemental strand, 3571036 - 3570819
Alignment:
Q  251 tgcactttctgaagtttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatactt 350  Q
    ||||||||  ||| ||||||| ||||||||||||| ||||| | ||||| |   ||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  3571036 tgcacttttggaattttaattcataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtactccaaatatactt 3570940  T
Q  351 ct--gagttttattgccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctattcatctctattgtaccatcattaattatta 448  Q
    ||  || ||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||  ||||||||||| ||||||||||| |||    
T  3570939 ctatgaatttcattgccactataaacttggtgtgtgcaatatctaattatacttgcagaatttcggatatttttctctattgta-catcattaattttta 3570841  T
Q  449 agtcagattatacacttttatg 470  Q
    ||||||||||||||||||||||    
T  3570840 agtcagattatacacttttatg 3570819  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 3571132 - 3571062
Alignment:
Q  187 ctttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcacttt 258  Q
    ||||||||||||||||||||  |||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  3571132 ctttcaatttgctattttttatgtaatgaaaaggactttcatcaattac-caccacaaatgccttgcacttt 3571062  T

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Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 265 - 470
Target Start/End: Complemental strand, 46354391 - 46354188
Alignment:
Q  265 tttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttct--gagttttatt 362  Q
    ||||||||||||||||||||| ||||| | ||||| |   ||||||||| ||||| ||||||||||||||||||  ||||||||||||  || |||||||    
T  46354391 tttaattgataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtacttcaaatatacttctatgaattttatt 46354295  T
Q  363 gccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctattcatctctattgtaccatcattaattattaagtcagattataca 462  Q
    ||||||||||| |||||| |||||| |||||||||||||||| ||||||| ||||||  ||||||||||| ||||||||||| |||| ||||||||||||    
T  46354294 gccactataaatttggtgtgtgcaatatctaattatacttgcagaatttcagctatttttctctattgta-catcattaatttttaaatcagattataca 46354196  T
Q  463 cttttatg 470  Q
    ||||||||    
T  46354195 cttttatg 46354188  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 46354505 - 46354434
Alignment:
Q  187 ctttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcacttt 258  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  46354505 ctttcaatttgctattttttacgtaatgaaaaggacttccatcagttaccaaccacaaatgccttgcacttt 46354434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 80963 - 81059
Alignment:
Q  260 tgaagtttaattgataatcataaagtaaagttttactacgataatta----ttgggtaggaaaattgtaaaactaatagtactcaaaatatacttct 352  Q
    ||||| || |||||||||||||||||||||||||| |  ||||||||    ||||||  ||||||||||||||||||||||||| | ||||||||||    
T  80963 tgaaggtttattgataatcataaagtaaagttttaatgtgataattaatgattgggtgagaaaattgtaaaactaatagtactccatatatacttct 81059  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 43652051 - 43651982
Alignment:
Q  270 ttgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactc 339  Q
    ||||||||||||||| ||| ||||  |  |||||| |||||||  ||||| |||||||||||||||||||    
T  43652051 ttgataatcataaaggaaatttttgttgtgataatgattgggtgagaaaaatgtaaaactaatagtactc 43651982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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