View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503-Insertion-5 (Length: 433)
Name: NF1503-Insertion-5
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 48754545 - 48754210
Alignment:
| Q |
8 |
ccaccctctatttattccttcagggtttcaataagggttacccagcaaattcagatacacaggtattgcaatgaaaatctggattaagtttggccaaatt |
107 |
Q |
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| T |
48754545 |
ccaccctctatttattccttcagggtttcaataagggttacccagcaaattcagatacacaggtattgcaatgtaaatctggattaagtttggccaaatt |
48754446 |
T |
|
| Q |
108 |
aagtaacattgattcacaactacgcaatcatagatccaatccacattaaacaatattttgctaaagcaaggatatcaattgcagtcgtgttgtaattaaa |
207 |
Q |
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| T |
48754445 |
aagtaacattgattcacaactacgcaatcatagatccaatccacattaaacaatattttgctaaagcaaggatatcaattgcagtcgtgttgtaat---- |
48754350 |
T |
|
| Q |
208 |
gtcacgcaaaaagagcggtcaagatcgggtcacaataatcaatgtcactgtcacaatcatcatatgtagttaatacaaacaagagaatcataattcaaat |
307 |
Q |
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| T |
48754349 |
------------------tcaagatcgggtcacaataatcaatgtcaatgtcacaatcatcatatgtagttaatacaaacaagagaatcataattcaaat |
48754268 |
T |
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| Q |
308 |
ttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaaaccttaacc |
365 |
Q |
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| T |
48754267 |
ttctgctagagcaacctaacaaagccttatcataaatatgaactgtcaaaacttaacc |
48754210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 49053051 - 49052934
Alignment:
| Q |
166 |
tgctaaagcaaggatatcaattgcagtcgtgttgtaattaaagtcacgcaaaaagagcggtcaagatcgggtcacaataatcaatgtcactgtcacaatc |
265 |
Q |
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| T |
49053051 |
tgctaaagcaaggatttcaattgcagtcgcgttgtaattaaattcacgc-aaaagagcggcca--atagggtcacaataatcaatgtcaatgtcacaatc |
49052955 |
T |
|
| Q |
266 |
atcatatgtagttaatacaaa |
286 |
Q |
| |
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|| ||||| ||| ||| |||| |
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| T |
49052954 |
attatatgcagtaaatgcaaa |
49052934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 49053220 - 49053124
Alignment:
| Q |
8 |
ccaccctctatttattccttcagggtttcaataagggttacccagcaaattcagatacacaggtattgcaatgaaaatctggattaagtttggccaa |
104 |
Q |
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||||||||||||| ||||||||| || ||||||||||||||||| |||| |||||||||||||||||||||| || |||| || |||||||||||| |
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| T |
49053220 |
ccaccctctattttttccttcagagtctcaataagggttacccaacaaactcagatacacaggtattgcaatcaatttctgaatcaagtttggccaa |
49053124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 48754189 - 48754150
Alignment:
| Q |
386 |
cataatcttcgatgttatgataataacaaattaatctaaa |
425 |
Q |
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| T |
48754189 |
cataatcttccatgttatgacaataacaaattaatctaaa |
48754150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 35914421 - 35914347
Alignment:
| Q |
283 |
caaacaagagaat-cataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaa |
356 |
Q |
| |
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||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| | ||||||||| |
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| T |
35914421 |
caaacgagagaattcataattcaaatatctgctagagcaacctaacaaagctttataagaaatgttaactgtcaa |
35914347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 35914736 - 35914688
Alignment:
| Q |
97 |
ttggccaaattaagtaacattgattcacaactacgcaatcatagatcca |
145 |
Q |
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||||||||| ||| |||||||||||||||||| ||||||| ||||||| |
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| T |
35914736 |
ttggccaaactaaagaacattgattcacaactaagcaatcaaagatcca |
35914688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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