View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503-Insertion-6 (Length: 416)

Name: NF1503-Insertion-6
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503-Insertion-6
NF1503-Insertion-6
[»] chr5 (24 HSPs)
chr5 (8-416)||(1180546-1180957)
chr5 (126-281)||(25408532-25408689)
chr5 (146-262)||(30780079-30780197)
chr5 (143-273)||(5777182-5777314)
chr5 (143-273)||(12750124-12750256)
chr5 (148-268)||(22581938-22582060)
chr5 (178-268)||(30893818-30893909)
chr5 (151-259)||(14303046-14303153)
chr5 (143-273)||(25408545-25408677)
chr5 (121-273)||(12750120-12750274)
chr5 (178-261)||(17967357-17967441)
chr5 (144-280)||(5777187-5777325)
chr5 (151-243)||(17967347-17967441)
chr5 (227-280)||(11915748-11915801)
chr5 (214-284)||(22581918-22581988)
chr5 (178-261)||(1098670-1098753)
chr5 (151-268)||(33075072-33075191)
chr5 (178-264)||(38860812-38860898)
chr5 (211-273)||(17768083-17768145)
chr5 (211-261)||(25792922-25792972)
chr5 (211-261)||(33075141-33075191)
chr5 (216-281)||(12646585-12646650)
chr5 (151-253)||(3100419-3100523)
chr5 (213-281)||(37944680-37944748)
[»] chr2 (27 HSPs)
chr2 (143-281)||(3123909-3124049)
chr2 (131-268)||(27881231-27881370)
chr2 (143-273)||(10221974-10222106)
chr2 (148-273)||(17866182-17866309)
chr2 (145-273)||(18356057-18356186)
chr2 (158-273)||(45035804-45035921)
chr2 (151-273)||(12242254-12242378)
chr2 (143-264)||(18356060-18356182)
chr2 (131-282)||(3123896-3124049)
chr2 (213-273)||(14308661-14308721)
chr2 (178-261)||(15859593-15859677)
chr2 (209-268)||(27881244-27881303)
chr2 (151-261)||(41824275-41824386)
chr2 (178-261)||(41824275-41824358)
chr2 (149-209)||(26836222-26836283)
chr2 (158-281)||(27331780-27331905)
chr2 (151-268)||(10221986-10222105)
chr2 (214-273)||(14308725-14308784)
chr2 (209-264)||(17866254-17866309)
chr2 (178-243)||(4637049-4637115)
chr2 (178-243)||(9071247-9071313)
chr2 (213-267)||(11726277-11726331)
chr2 (211-261)||(26229521-26229571)
chr2 (211-261)||(27964298-27964348)
chr2 (149-268)||(30902285-30902406)
chr2 (151-281)||(42530486-42530618)
chr2 (151-262)||(44274556-44274668)
[»] chr1 (36 HSPs)
chr1 (130-268)||(15351708-15351848)
chr1 (143-273)||(38468688-38468820)
chr1 (148-268)||(8984194-8984317)
chr1 (143-264)||(26937867-26937990)
chr1 (143-268)||(14958687-14958814)
chr1 (178-280)||(9002771-9002875)
chr1 (151-261)||(34953910-34954022)
chr1 (151-243)||(31325842-31325936)
chr1 (148-243)||(41007688-41007785)
chr1 (143-273)||(15351717-15351849)
chr1 (151-273)||(5431355-5431478)
chr1 (151-268)||(48083518-48083637)
chr1 (223-268)||(1741616-1741661)
chr1 (211-280)||(6508473-6508542)
chr1 (151-261)||(3549793-3549905)
chr1 (193-264)||(21444215-21444287)
chr1 (169-249)||(52826166-52826246)
chr1 (223-286)||(7037905-7037968)
chr1 (143-268)||(26937868-26937995)
chr1 (178-264)||(31909791-31909877)
chr1 (178-243)||(29070659-29070725)
chr1 (178-263)||(43384525-43384610)
chr1 (211-261)||(48083518-48083568)
chr1 (149-261)||(5431355-5431468)
chr1 (209-286)||(23944026-23944103)
chr1 (178-243)||(39940519-39940584)
chr1 (209-261)||(6340644-6340696)
chr1 (213-273)||(8257945-8258005)
chr1 (143-273)||(8257949-8258081)
chr1 (213-261)||(9501453-9501501)
chr1 (213-261)||(14214607-14214655)
chr1 (151-261)||(14891752-14891864)
chr1 (131-202)||(21444198-21444270)
chr1 (176-243)||(34184474-34184542)
chr1 (213-261)||(34768356-34768404)
chr1 (213-261)||(52923401-52923449)
[»] chr4 (29 HSPs)
chr4 (143-268)||(54106481-54106608)
chr4 (143-268)||(52674822-52674950)
chr4 (143-273)||(33558803-33558935)
chr4 (146-273)||(54922275-54922404)
chr4 (143-273)||(4370402-4370534)
chr4 (143-273)||(20598263-20598395)
chr4 (144-218)||(54508176-54508252)
chr4 (212-280)||(12596671-12596739)
chr4 (154-268)||(44239801-44239917)
chr4 (143-280)||(20598252-20598391)
chr4 (176-261)||(4406281-4406367)
chr4 (149-281)||(13689530-13689664)
chr4 (223-268)||(41905875-41905920)
chr4 (143-273)||(54106477-54106609)
chr4 (214-281)||(52674810-52674877)
chr4 (214-273)||(54508171-54508230)
chr4 (176-281)||(3504071-3504177)
chr4 (131-197)||(16040040-16040106)
chr4 (213-280)||(29006830-29006897)
chr4 (206-261)||(35005126-35005181)
chr4 (151-260)||(52914013-52914124)
chr4 (211-261)||(19934714-19934764)
chr4 (211-261)||(20215581-20215631)
chr4 (211-261)||(54164889-54164939)
chr4 (178-243)||(54787014-54787080)
chr4 (211-280)||(2440905-2440974)
chr4 (151-262)||(22586718-22586831)
chr4 (231-268)||(48414875-48414912)
chr4 (178-261)||(21586932-21587016)
[»] chr7 (27 HSPs)
chr7 (143-268)||(29779720-29779847)
chr7 (179-281)||(31417560-31417663)
chr7 (143-273)||(14995867-14995999)
chr7 (144-273)||(44416534-44416665)
chr7 (143-273)||(15051089-15051221)
chr7 (143-266)||(22752566-22752691)
chr7 (143-273)||(15051085-15051217)
chr7 (141-257)||(27242418-27242536)
chr7 (144-251)||(35216483-35216592)
chr7 (151-253)||(24934573-24934677)
chr7 (216-281)||(22752554-22752619)
chr7 (143-273)||(44416538-44416670)
chr7 (151-259)||(26385639-26385749)
chr7 (178-261)||(2943254-2943338)
chr7 (178-261)||(12274851-12274935)
chr7 (158-261)||(38940234-38940338)
chr7 (149-243)||(39970189-39970284)
chr7 (213-261)||(48440009-48440057)
chr7 (214-273)||(8595149-8595208)
chr7 (151-200)||(35641492-35641542)
chr7 (186-243)||(47300057-47300115)
chr7 (178-243)||(8169129-8169194)
chr7 (212-261)||(10599069-10599118)
chr7 (158-261)||(19688113-19688218)
chr7 (184-263)||(12171254-12171334)
chr7 (212-280)||(37930775-37930843)
chr7 (169-243)||(47778461-47778537)
[»] chr6 (22 HSPs)
chr6 (132-268)||(3012367-3012505)
chr6 (144-268)||(7158263-7158389)
chr6 (143-264)||(8030327-8030449)
chr6 (143-273)||(15836545-15836677)
chr6 (178-273)||(33053767-33053863)
chr6 (143-268)||(2990562-2990688)
chr6 (211-273)||(13276488-13276550)
chr6 (130-210)||(13277088-13277169)
chr6 (197-264)||(4808271-4808339)
chr6 (146-264)||(8030325-8030444)
chr6 (209-264)||(3012434-3012489)
chr6 (214-273)||(13277101-13277160)
chr6 (181-261)||(6032980-6033061)
chr6 (178-261)||(13462975-13463058)
chr6 (214-280)||(15836534-15836600)
chr6 (184-261)||(32254869-32254947)
chr6 (184-281)||(33689223-33689321)
chr6 (158-261)||(6032987-6033092)
chr6 (209-278)||(16199117-16199186)
chr6 (184-255)||(16465554-16465626)
chr6 (151-261)||(26527204-26527316)
chr6 (221-281)||(33018939-33018999)
[»] chr3 (25 HSPs)
chr3 (132-268)||(7981152-7981290)
chr3 (129-280)||(27707170-27707323)
chr3 (131-260)||(4980267-4980398)
chr3 (148-281)||(35572011-35572146)
chr3 (148-284)||(31706624-31706762)
chr3 (143-264)||(26367477-26367604)
chr3 (146-225)||(22405919-22406000)
chr3 (152-286)||(4980262-4980398)
chr3 (143-280)||(7981151-7981290)
chr3 (132-273)||(26367473-26367620)
chr3 (151-261)||(10872686-10872798)
chr3 (211-261)||(2128437-2128487)
chr3 (158-261)||(24596905-24597010)
chr3 (212-281)||(50603590-50603659)
chr3 (151-261)||(51253684-51253796)
chr3 (158-222)||(5919454-5919520)
chr3 (176-261)||(10841711-10841797)
chr3 (223-281)||(27707172-27707230)
chr3 (214-268)||(31706620-31706674)
chr3 (123-203)||(2128434-2128515)
chr3 (176-243)||(5790681-5790749)
chr3 (229-273)||(8439352-8439396)
chr3 (178-261)||(12744915-12744999)
chr3 (151-261)||(37897696-37897808)
chr3 (209-281)||(42787690-42787761)
[»] chr8 (25 HSPs)
chr8 (143-266)||(15936209-15936334)
chr8 (143-268)||(29423990-29424117)
chr8 (143-274)||(8506219-8506351)
chr8 (143-268)||(21435676-21435804)
chr8 (214-273)||(8506296-8506355)
chr8 (151-255)||(7428906-7429012)
chr8 (143-273)||(29423989-29424121)
chr8 (178-291)||(7258627-7258741)
chr8 (151-195)||(3687559-3687604)
chr8 (151-243)||(13841862-13841955)
chr8 (213-261)||(7428906-7428954)
chr8 (178-264)||(3611781-3611867)
chr8 (178-280)||(10117012-10117115)
chr8 (178-264)||(38883958-38884044)
chr8 (143-188)||(7223898-7223944)
chr8 (178-243)||(19293048-19293114)
chr8 (211-273)||(24053599-24053661)
chr8 (176-261)||(45045417-45045503)
chr8 (151-243)||(24418913-24419006)
chr8 (211-264)||(26489617-26489669)
chr8 (178-243)||(33934121-33934185)
chr8 (211-280)||(41387838-41387907)
chr8 (151-210)||(1897872-1897932)
chr8 (178-261)||(5888378-5888462)
chr8 (209-261)||(24820312-24820364)
[»] scaffold0024 (1 HSPs)
scaffold0024 (148-273)||(99982-100109)
[»] scaffold0149 (1 HSPs)
scaffold0149 (151-263)||(24618-24732)
[»] scaffold0015 (1 HSPs)
scaffold0015 (214-266)||(17314-17364)
[»] scaffold0007 (1 HSPs)
scaffold0007 (208-268)||(246802-246862)


Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 416
Target Start/End: Original strand, 1180546 - 1180957
Alignment:
Q  8 gctagagcattttaacaaatccttgaacattcaaagagttgatttaggttgaatacaacaatttccaagacaaaatatttaaatttgcttcattttgaag 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1180546 gctagagcattttaacaaatctttgaacattcaaagagttgatttaagttgaatacaacaatttccaagacaaaatatttaaatttgcttcattttgaag 1180645  T
Q  108 tgttctaaatatactcttataacatacatcctacagtcataaatataaacaaaaattcatattttaaattattcaataaataatgtatgttgtctacaat 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1180646 tgttctaaatatactcttataacatacatcctacagtcacaaatataaacaaaaattcatattttaaattattcaataaataatgtatgttgtctacaat 1180745  T
Q  208 aaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtat--cttttttgttaattcatactaag 304  Q
    ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  1180746 aaagaccacatacattatttattgaatgaacctaaaacgtaaatttttgcttatatttgtgagcggatgatgtattccttatttgttaattcatactaag 1180845  T
Q  305 attcacatgctattttgagtgatcctgacaaatttgcatatgtatacactaaatataatcaccgtatataagtggtcagtggcagagaatgtatccacgt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1180846 attcacatgctattttgagtgatcctgacaaatttgcatatgtatacactaaatataatcaccgtatataagtggtcagtggcagagaatgtatccacgt 1180945  T
Q  405 ggcataagctta 416  Q
    ||||||||||||    
T  1180946 ggcataagctta 1180957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 126 - 281
Target Start/End: Original strand, 25408532 - 25408689
Alignment:
Q  126 ataacatacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacatta 223  Q
    |||| ||||| ||| | |||| |||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||| |    
T  25408532 ataaaatacaccctccggtcacaaatataagcaaaaattcatattttagattcattcaataaatgatgtatgttgtctacaataaagaccacatacatca 25408631  T
Q  224 ttttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtat 281  Q
    ||| ||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||    
T  25408632 tttattgaatgaatctaaaacataaatttttgcttatatttatgaccggatggtgtat 25408689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 30780079 - 30780197
Alignment:
Q  146 ataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaa 243  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||| |||| |||||||||  |||||    
T  30780079 ataaatataagcaaaaattcatattttaaatttattcaataaatgatgtatgttgtctacaataaagaccgcatacatcatttattgaatgaatttaaaa 30780178  T
Q  244 cataaatttttgcttatat 262  Q
    |||||||||||||||||||    
T  30780179 cataaatttttgcttatat 30780197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 5777314 - 5777182
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaa-ccacatacattattttttgaatgaaccta 240  Q
    |||||||||||||  |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||||| ||  ||    
T  5777314 gtcataaatataagtaaaaattcatattttacattcattcaataaatgatgtatgttgtctacaataaaaaccacatacaatatttattgaataaattta 5777215  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    |||||||||||||||||||||||| ||| ||||    
T  5777214 aaacataaatttttgcttatatttatgatcgga 5777182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 12750124 - 12750256
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaac-cacatacattattttttgaatgaaccta 240  Q
    |||| ||||||||||||||||| || ||||| ||  ||||||||||| |||||| ||||||||||||||   |||||||||||||| |||||||||  ||    
T  12750124 gtcacaaatataaacaaaaatttatgttttagatacattcaataaatgatgtatattgtctacaataaaggtcacatacattatttattgaatgaattta 12750223  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    |||||| ||||||||||||||||||||| ||||    
T  12750224 aaacatgaatttttgcttatatttgtgaccgga 12750256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 268
Target Start/End: Original strand, 22581938 - 22582060
Alignment:
Q  148 aaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaa-ccacatacattattttttgaatgaacctaaaaca 245  Q
    |||||||| ||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||| | ||||||||||||  || ||| ||  |||||||    
T  22581938 aaatataagcaaaaattcatattttagattcatttaataaattatgtatgttgtctacaataaaatctacatacattattcattaaataaatttaaaaca 22582037  T
Q  246 taaatttttgcttatatttgtga 268  Q
    | ||||||| |||||||||||||    
T  22582038 tgaatttttacttatatttgtga 22582060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 30893818 - 30893909
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtga 268  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||| |||| ||||||||| |||||||||  |||||| |||||||||||||    
T  30893818 attcaataaatgatgtatgttgcctacaataaagaccacatacatcatttattgaatgaatctaaaacatggattttttcttatatttgtga 30893909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 14303153 - 14303046
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaacataaa 249  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||| |||| ||  ||||||||||||| || ||| || | |||| |||||    
T  14303153 tataaacaaaaattcattctttaaattcattcaataaataatgtatgttgtctataatataa--acatacattatttattcaataaatcaaaaatataaa 14303056  T
Q  250 tttttgctta 259  Q
    ||||||||||    
T  14303055 tttttgctta 14303046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 25408677 - 25408545
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    ||||||||||||| |||||||| || ||||| ||| ||||||||||| |||||||| ||||  | |  | || |||||||| |||| ||||||||| |||    
T  25408677 gtcataaatataagcaaaaatttatgttttagattcattcaataaatgatgtatgtggtctttattgtagacaacatacatcatttattgaatgaatcta 25408578  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    ||| || ||||||||||||||||||||| ||||    
T  25408577 aaatatgaatttttgcttatatttgtgaccgga 25408545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 273
Target Start/End: Complemental strand, 12750274 - 12750120
Alignment:
Q  121 ctcttataacatacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaat-aaaaccacata 218  Q
    ||||| ||| ||||| ||| | |||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||   ||  | |  | || | |||    
T  12750274 ctcttgtaatatacaccctccggtcacaaatataagcaaaaattcatgttttaaattcattcaataaataatgtatgtgacctttattgtagacaatata 12750175  T
Q  219 cattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    ||| |||| ||||||| | |||||||||||||||||| |||||||||||| ||||    
T  12750174 catcatttattgaatgtatctaaaacataaatttttgtttatatttgtgaccgga 12750120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 17967357 - 17967441
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    |||||||||||||||||||||||||| | |||| ||||||||||| |||| |||||||||  ||||| || |||||||| |||||    
T  17967357 attcaataaataatgtatgttgtctatattaaagaccacatacatcatttattgaatgaatataaaatatcaatttttgtttata 17967441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 280
Target Start/End: Original strand, 5777187 - 5777325
Alignment:
Q  144 tcataaatataaacaaaaattcatattttaaa-ttattcaataaataatgtatgttgtctacaat-aaaaccacatacattattttttgaatgaacctaa 241  Q
    |||||||||||| |||||||| || ||||||| |||||||||||||| ||||||| || |  | |  | || |||||||| |||| |||||||||  |||    
T  5777187 tcataaatataagcaaaaatttatgttttaaatttattcaataaatattgtatgtggtttttattgtagacaacatacatcatttattgaatgaatgtaa 5777286  T
Q  242 aacataaatttttgcttatatttgtgagcggatgatgta 280  Q
    || || ||||||| ||||||||| ||| |||||||||||    
T  5777287 aatatgaatttttacttatatttatgaccggatgatgta 5777325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 17967441 - 17967347
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaa 243  Q
    |||||||||||||| |||||||| ||| ||||||||||| |||||||| ||||  |||| | || ||||||||||||| |||||||||| |||||    
T  17967441 tataaacaaaaattgatattttatattcattcaataaatgatgtatgtggtctttaatatagacaacatacattatttattgaatgaacgtaaaa 17967347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 11915801 - 11915748
Alignment:
Q  227 tttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgta 280  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||    
T  11915801 tttgaatgaatctaaaacatgaatttttgcttatatttgtgaccggaggatgta 11915748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 22581988 - 22581918
Alignment:
Q  214 acatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtatctt 284  Q
    |||||||| |||| || |||||| |||||| || ||||||||||||||||||||| |||||  ||||||||    
T  22581988 acatacataatttattaaatgaatctaaaatatgaatttttgcttatatttgtgatcggatattgtatctt 22581918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 1098670 - 1098753
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| |||||||| ||||| |   | || ||||||||||||| || |||||| |||||| ||||| |||||||||||    
T  1098670 attcaataaatgatgtatgtggtctatatatagactacatacattatttattaaatgaatctaaaaaataaacttttgcttata 1098753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 268
Target Start/End: Complemental strand, 33075191 - 33075072
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||| ||||||||  || ||||| ||||| |||||||| ||||| | |||| | || |||| |||||  ||||||||| |||||| ||||    
T  33075191 tataagcaaaaattaatattttaggttcattcattaaatgatgtatgtggtctatagtaaagatcatatacgttattaattgaatgaatctaaaatataa 33075092  T
Q  249 atttttgcttatatttgtga 268  Q
    | ||||||||||||| ||||    
T  33075091 agttttgcttatattagtga 33075072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 38860898 - 38860812
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataa-aaccacatacattattttttgaatgaacctaaaacataaatttttgcttatattt 264  Q
    ||||||| ||| |||||||| ||||| ||||  |||||||||||| |||  |||||||||||||||| || || ||||||||||||||    
T  38860898 attcaattaatgatgtatgtggtctataatatgaaccacatacatcattaattgaatgaacctaaaaaatcaa-ttttgcttatattt 38860812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 17768083 - 17768145
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    |||| ||||||||| | || ||||||||||||| |||| ||||||||||||| ||||| ||||    
T  17768083 accaaatacattatgtattcaatgaacctaaaaaataattttttgcttatatatgtgaccgga 17768145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 25792922 - 25792972
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| ||||  |||||||||||||||  ||||||||||||||||    
T  25792922 accacatacatcatttaatgaatgaacctaaaaagtaaatttttgcttata 25792972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 33075141 - 33075191
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| ||||  ||||||||||||||| || ||||||||||||||    
T  33075141 accacatacatcatttaatgaatgaacctaaaatattaatttttgcttata 33075191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 12646585 - 12646650
Alignment:
Q  216 atacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtat 281  Q
    |||||| |||| || |||||| ||||||  ||||||||||||||||||| ||| |||| |||||||    
T  12646585 atacatcatttattaaatgaatctaaaaagtaaatttttgcttatatttatgaccggaggatgtat 12646650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 253
Target Start/End: Original strand, 3100419 - 3100523
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||| | |||||| ||| ||||||||||| |||||||| ||||| |||||| | || |||||| |||  ||||||||| ||||||  |||    
T  3100419 tataagcaaaaattaacattttagattcattcaataaatgatgtatgtagtctataataaagatcatatacatcattaattgaatgaatctaaaatgtaa 3100518  T
Q  249 atttt 253  Q
    |||||    
T  3100519 atttt 3100523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 37944680 - 37944748
Alignment:
Q  213 cacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtat 281  Q
    ||||||||| |||  ||||||| | |||||| ||||||||||||||||||| |||| || ||| |||||    
T  37944680 cacatacatcattaattgaatgtatctaaaaaataaatttttgcttatattagtgaccgaatgttgtat 37944748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 143 - 281
Target Start/End: Original strand, 3123909 - 3124049
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaacc-acatacattattttttgaatgaaccta 240  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||||  | |||||||| |||| ||||||||| |||    
T  3123909 gtcataaatataaacaaaagttcatattttagattcattcaataaatgatgtatgttgtctacaataaagtctacatacatcatttattgaatgaatcta 3124008  T
Q  241 aaacataaatttttgcttatatttgtgagcggatgatgtat 281  Q
    |||||| ||||||||||||||||||||| |||| |||||||    
T  3124009 aaacatgaatttttgcttatatttgtgaccggaggatgtat 3124049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 27881231 - 27881370
Alignment:
Q  131 atacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttt 228  Q
    ||||| ||| |||||| |||||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||| ||||||||| |||||||| || |||| |    
T  27881231 atacaccctccagtcacaaatataagcaaaaattcatgttttatattcattcaataaatgatgtatgttgtttacaataaataccacatatatcatttat 27881330  T
Q  229 tgaatgaacctaaaacataaatttttgcttatatttgtga 268  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  27881331 tgaatgaacctaaaacattgatttttgcttatatttgtga 27881370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 10222106 - 10221974
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaat-aaaaccacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| ||||||||||||||||||| | ||||||||||| |||||| ||||||||||| ||||| |||||||| |||| |||||||||  ||    
T  10222106 gtcacaaatataagcaaaaattcatattttaaaatcattcaataaatgatgtatattgtctacaataaaaacaacatacatcatttattgaatgaatata 10222007  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    |||||| |||||||| ||||| |||||| ||||    
T  10222006 aaacatgaatttttgtttataattgtgaccgga 10221974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 273
Target Start/End: Complemental strand, 17866309 - 17866182
Alignment:
Q  148 aaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaaca 245  Q
    |||||||| ||||||| ||| ||||| ||| ||||||||||| ||||||||||| ||||||||| ||||||||||| |||| || |||||||||||||||    
T  17866309 aaatataagcaaaaatccatgttttagattcattcaataaattatgtatgttgtttacaataaagaccacatacatcatttattaaatgaacctaaaaca 17866210  T
Q  246 taaatttttgcttatatttgtgagcgga 273  Q
    |  ||||||||||| |||||||| ||||    
T  17866209 ttgatttttgcttagatttgtgaccgga 17866182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 18356057 - 18356186
Alignment:
Q  145 cataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaa 242  Q
    ||||||||||||||||| ||||| ||||| ||| ||||||||||| |||||||||||||||| |||| ||| ||||||| |||| ||| |||||  ||||    
T  18356057 cataaatataaacaaaatttcatgttttagattcattcaataaatgatgtatgttgtctacagtaaagaccgcatacatcatttattg-atgaatttaaa 18356155  T
Q  243 acataaatttttgcttatatttgtgagcgga 273  Q
    |||| |||||||| |||||||||||| ||||    
T  18356156 acatgaatttttgtttatatttgtgaccgga 18356186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 45035804 - 45035921
Alignment:
Q  158 aaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttg 255  Q
    ||||| |||||||||| ||| ||||||||||| ||  || |||| | ||||||| ||||||||||| |||| |||| |||| |||||||||| |||||||    
T  45035804 aaaaaatcatattttagattcattcaataaatgatacattttgtatgcaataaagaccacatacatcatttattgagtgaatctaaaacatatatttttg 45035903  T
Q  256 cttatatttgtgagcgga 273  Q
    ||||||||||||| ||||    
T  45035904 cttatatttgtgaccgga 45035921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 273
Target Start/End: Original strand, 12242254 - 12242378
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| ||||||  ||||||||| ||| ||||||||||| ||||||||| ||||||||||| || |||||||| ||||  |||||||| |||||| ||      
T  12242254 tataagcaaaaaaccatattttagattcattcaataaatgatgtatgttatctacaataaagactacatacatcatttaatgaatgaatctaaaatatgg 12242353  T
Q  249 atttttgcttatatttgtgagcgga 273  Q
    | |||||||||||||||||| ||||    
T  12242354 aattttgcttatatttgtgaccgga 12242378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 18356182 - 18356060
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaattattcaataaataatgtatgttgtctacaat-aaaaccacatacattattttttgaatgaacctaa 241  Q
    |||| |||||||||||||||||||| |||||||||  ||||||||| |||||||  ||||  | |  | || |||||||| |||| ||||||||| ||||    
T  18356182 gtcacaaatataaacaaaaattcatgttttaaattcatcaataaatgatgtatgcggtctttactgtagacaacatacatcatttattgaatgaatctaa 18356083  T
Q  242 aacataaatttttgcttatattt 264  Q
    ||||| || ||||| ||||||||    
T  18356082 aacatgaaattttgtttatattt 18356060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 282
Target Start/End: Complemental strand, 3124049 - 3123896
Alignment:
Q  131 atacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaat-aaaaccacatacattattttt 228  Q
    ||||||||| | |||| |||||||| ||||||||||| ||||| ||| ||||||||||| |||||||| | ||  | |  | || |||||||| |||| |    
T  3124049 atacatcctccggtcacaaatataagcaaaaattcatgttttagattcattcaataaatgatgtatgtagactttattgtagacaacatacatcatttat 3123950  T
Q  229 tgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtatc 282  Q
    |||||||| |||||| || || ||||| |||||||| ||| |||||| ||||||    
T  3123949 tgaatgaatctaaaatatgaacttttgtttatatttatgaccggatggtgtatc 3123896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 14308721 - 14308661
Alignment:
Q  213 cacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    ||||||||| |||| ||||||||| ||||||||| ||| ||||||||||||||||| ||||    
T  14308721 cacatacatcatttattgaatgaatctaaaacatgaatgtttgcttatatttgtgatcgga 14308661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 15859593 - 15859677
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||| |||||||||||||||||||| |||||| | || |||||| |||  ||||||||| |||||| ||| |||||||||||||    
T  15859593 attcattaaataatgtatgttgtctataataaatatcatatacatcattaattgaatgaatctaaaatatagatttttgcttata 15859677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 27881303 - 27881244
Alignment:
Q  209 aaaccacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtga 268  Q
    |||| |||||||| |||| |||||||||  |||||||| |||||||||||||||||||||    
T  27881303 aaacaacatacatcatttattgaatgaatataaaacatgaatttttgcttatatttgtga 27881244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 41824275 - 41824386
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaacataaa 249  Q
    ||||| ||||||||||| ||||| ||| ||||||||||| |||||||| || || |   | ||||||||||| |||| ||||||||||||||||  | ||    
T  41824275 tataagcaaaaattcattttttagattcattcaataaattatgtatgtagtttatatatagaccacatacatcatttattgaatgaacctaaaaagtcaa 41824374  T
Q  250 tttttgcttata 261  Q
    ||||| ||||||    
T  41824375 tttttacttata 41824386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 41824358 - 41824275
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| |||||||| ||||| |   |||| |||||||| |||| ||||||||| |||||| || ||||||||||||||    
T  41824358 attcaataaatgatgtatgtggtctatatataaactacatacataatttattgaatgaatctaaaaaatgaatttttgcttata 41824275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 26836283 - 26836222
Alignment:
Q  149 aatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataa 209  Q
    ||||||| ||||||| ||||||||| ||| ||||||||||| || |||||||||||||||||    
T  26836283 aatataagcaaaaatccatattttagattcattcaataaatgatttatgttgtctacaataa 26836222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 281
Target Start/End: Original strand, 27331780 - 27331905
Alignment:
Q  158 aaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttg 255  Q
    ||||||||| |||||||||| ||||| |||||||| ||| |||| || |||||| || |||||||| |||  ||||||||| ||||||  |  |||||||    
T  27331780 aaaaattcacattttaaattcattcattaaataatatatattgtttataataaagactacatacatcattaattgaatgaatctaaaatgttgatttttg 27331879  T
Q  256 cttatatttgtgagcggatgatgtat 281  Q
    |||||| | |||| |||| |||||||    
T  27331880 cttataatagtgaccggaggatgtat 27331905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 10221986 - 10222105
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaat-aaaaccacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||||||||||||||| ||||| ||| ||||||||||| ||||||||||| |  | |  | || | |||||| |||| ||||||||   ||||| || |    
T  10221986 tataaacaaaaattcatgttttatattcattcaataaatgatgtatgttgtttttattgtagacaatatacatcatttattgaatgattttaaaatatga 10222085  T
Q  249 atttttgcttatatttgtga 268  Q
    ||||||||||||||||||||    
T  10222086 atttttgcttatatttgtga 10222105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 14308725 - 14308784
Alignment:
Q  214 acatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    |||||||| |||| ||||||||| |||||| || | ||||||||||||||||||| ||||    
T  14308725 acatacatcatttattgaatgaatctaaaatatgattttttgcttatatttgtgatcgga 14308784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 17866254 - 17866309
Alignment:
Q  209 aaaccacatacattattttttgaatgaacctaaaacataaatttttgcttatattt 264  Q
    |||| |||||||| |||| ||||||||| |||||||||  ||||||||||||||||    
T  17866254 aaacaacatacataatttattgaatgaatctaaaacatggatttttgcttatattt 17866309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 4637049 - 4637115
Alignment:
Q  178 attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaa 243  Q
    ||||||| |||||||||||| ||||| |||| ||||||||||||| |||  ||||||||| ||||||    
T  4637049 attcaatcaataatgtatgtggtctataatataaaccacatacatcattaattgaatgaatctaaaa 4637115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 9071247 - 9071313
Alignment:
Q  178 attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaa 243  Q
    ||||||| ||| |||||||| ||||| |||| |||||||||||||||||  |||||||||| |||||    
T  9071247 attcaattaatgatgtatgtagtctataatataaaccacatacattattaattgaatgaacttaaaa 9071313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 11726331 - 11726277
Alignment:
Q  213 cacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtg 267  Q
    |||||||||||||| ||||||| ||||||||  |||||||||| ||||| |||||    
T  11726331 cacatacattatttattgaatgcacctaaaaagtaaatttttgtttataattgtg 11726277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 26229521 - 26229571
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    |||||||||| |||||  ||||||||||||||| || ||||||||||||||    
T  26229521 accacatacaatatttaatgaatgaacctaaaaaatgaatttttgcttata 26229571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 27964348 - 27964298
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| |||| ||||||||||||||||  | ||||||||||||||    
T  27964348 accacatacataatttattgaatgaacctaaaaagtcaatttttgcttata 27964298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 268
Target Start/End: Original strand, 30902285 - 30902406
Alignment:
Q  149 aatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacat 246  Q
    ||||||| ||||||||||| ||||||||  ||||||| ||| ||||||||    || |||||| |||||||| || |||  ||||||| | ||||||  |    
T  30902285 aatataagcaaaaattcattttttaaatacattcaattaatgatgtatgtgacatataataaagaccacatatatcattaattgaatgtatctaaaaagt 30902384  T
Q  247 aaatttttgcttatatttgtga 268  Q
    ||||||||||||||||| ||||    
T  30902385 aaatttttgcttatattagtga 30902406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 42530618 - 42530486
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||| | |||||| ||| ||||| ||||  |||||| ||||||| |||||| |||  ||||| ||||  || |||||| ||||||  |||    
T  42530618 tataagcaaaaattaacattttacattcattcattaaacgatgtatattgtctataataaagaccgtatacaatattaattaaatgaatctaaaatgtaa 42530519  T
Q  249 atttttgcttatatttgtgagcggatgatgtat 281  Q
    |||||| |||||| | |||| ||||||||||||    
T  42530518 atttttacttataatagtgaccggatgatgtat 42530486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 262
Target Start/End: Original strand, 44274556 - 44274668
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaacataaa 249  Q
    ||||||||||| || | |||||| ||| ||||||||||| || ||||| ||||| |   | || |||||||| |||| ||||||||| ||||||  | ||    
T  44274556 tataaacaaaagttgacattttagattcattcaataaatgatatatgtagtctatatacagactacatacatcatttattgaatgaatctaaaaagtgaa 44274655  T
Q  250 tttttgcttatat 262  Q
    |||||||||||||    
T  44274656 tttttgcttatat 44274668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 15351708 - 15351848
Alignment:
Q  130 catacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattatttt 227  Q
    |||||| ||| | |||| |||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| ||||     
T  15351708 catacaccctccggtcacaaatataagcaaaaatttatattttaaattcattcaataaatgatgtatgttgtctacaataaagaccacatacatcattta 15351807  T
Q  228 ttgaatgaacctaaaacataaatttttgcttatatttgtga 268  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  15351808 ttgaatgaatctaaaacatagatttttgcttatatttgtga 15351848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 38468820 - 38468688
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| ||||||||  |||||||||||||||| ||  ||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| |||    
T  38468820 gtcacaaatataagaaaaaattcatattttagatacatttaataaatgatgtatgttgtctacaataaagaccacatacattatttattgaatgaatcta 38468721  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    ||||||||| ||| |||||||||| ||| ||||    
T  38468720 aaacataaaatttagcttatatttatgaccgga 38468688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 268
Target Start/End: Complemental strand, 8984317 - 8984194
Alignment:
Q  148 aaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaaca 245  Q
    |||||||| ||||||||| ||||||| ||| ||||||||||| || |||||||||||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  8984317 aaatataagcaaaaattcgtattttagattcattcaataaatgatttatgttgtctacaataaagaccacatacatcatttattgaatgaatctaaaaca 8984218  T
Q  246 taaatttttgctta-tatttgtga 268  Q
    | | |||||||||| |||||||||    
T  8984217 tgattttttgcttattatttgtga 8984194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 264
Target Start/End: Original strand, 26937867 - 26937990
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| ||||  |||| || ||||||  ||    
T  26937867 gtcacaaatataagcaaaaattcatattttaaattcattcaataaatgatgtatattgtctacaataaagaccacttacaccatttatttaatgaattta 26937966  T
Q  241 aaacataaatttttgcttatattt 264  Q
    ||||||||||||||| ||||||||    
T  26937967 aaacataaatttttgtttatattt 26937990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 14958687 - 14958814
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| ||||| |||| |||||| ||| ||||||||||| ||||||||||||||||||||| | ||||  ||| |||| |||||| || |||    
T  14958687 gtcacaaatataagcaaaacttcaaattttagattcattcaataaatgatgtatgttgtctacaataaagatcacacgcatcatttattgaataaatcta 14958786  T
Q  241 aaacataaatttttgcttatatttgtga 268  Q
    ||| || ||||||| |||||||||||||    
T  14958787 aaaaatgaattttttcttatatttgtga 14958814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 9002771 - 9002875
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacct-aaaacataaatttttgcttatatttgtgagcggatg 275  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||| |||| || |||||| || |||||||| ||||||||||| |||| ||| ||||||    
T  9002771 attcaataaatgatgtatgttgtctacaataaagatcacatacatcatttattaaatgaatctaaaaacatagatttttgcttacatttatgaccggatg 9002870  T
Q  276 atgta 280  Q
     ||||    
T  9002871 gtgta 9002875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 34953910 - 34954022
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||  |||||||||||| ||||| ||||| |||||||| ||||| |||||| |||| |||||| |||  ||||||||| |||||| ||||    
T  34953910 tataagcaaaaatcaatattttaaattcattcattaaatgatgtatgtggtctataataaagaccatatacatcattaattgaatgaatctaaaatataa 34954009  T
Q  249 atttttgcttata 261  Q
    |||||||||||||    
T  34954010 atttttgcttata 34954022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 31325936 - 31325842
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaa 243  Q
    |||||| |||||||||||||||| ||| |||||||||||  | |||||||||||||||||| | |||||||||||||  |||||| || ||||||    
T  31325936 tataaataaaaattcatattttagattcattcaataaatgttatatgttgtctacaataaagaacacatacattattaattgaataaatctaaaa 31325842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 41007688 - 41007785
Alignment:
Q  148 aaatataaacaaaaattcatattttaaa-ttattcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaa 243  Q
    |||||||| |||||||  |||||||||| ||||||| ||||| |||||||| ||||| |||||| ||||||||||| ||||  |||||||| ||||||    
T  41007688 aaatataagcaaaaatcaatattttaaatttattcattaaatgatgtatgtggtctataataaagaccacatacatcatttaatgaatgaatctaaaa 41007785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 15351849 - 15351717
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| |||||||  || ||||| ||| ||||||||||| |||||||| ||||  | |  | || |||||||| |||| |||||||||  ||    
T  15351849 gtcacaaatataagcaaaaatctatgttttagattcattcaataaatgatgtatgtggtctttattgtagacaacatacatcatttattgaatgaattta 15351750  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    ||| |||||||||||||||||||||||| ||||    
T  15351749 aaatataaatttttgcttatatttgtgaccgga 15351717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 273
Target Start/End: Original strand, 5431355 - 5431478
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaacataaa 249  Q
    ||||| ||||||||||  ||||| ||| ||||||||||| | ||||||||||||     | ||||||||||| |||| ||||||||| ||||||  | ||    
T  5431355 tataagcaaaaattcactttttagattcattcaataaatgaagtatgttgtctatgtgtagaccacatacatcatttattgaatgaatctaaaaagttaa 5431454  T
Q  250 tttttgcttatatttgtgagcgga 273  Q
    |||||||||||||| |||| ||||    
T  5431455 tttttgcttatattagtgaccgga 5431478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 48083518 - 48083637
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||| ||||||||  || ||||| ||||| |||||||| ||||| |||||| | || |||| |||||  ||||||||| |||||| ||||    
T  48083518 tataagcaaaaattaatattttaggttcattcattaaatgatgtatgtggtctataataaagatcatatacgttattaattgaatgaatctaaaatataa 48083617  T
Q  249 atttttgcttatatttgtga 268  Q
    | ||||||||||||| ||||    
T  48083618 agttttgcttatattagtga 48083637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 1741661 - 1741616
Alignment:
Q  223 attttttgaatgaacctaaaacataaatttttgcttatatttgtga 268  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||    
T  1741661 atttattgaatgaatctaaaacatgaatttttgcttatatttgtga 1741616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 6508473 - 6508542
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgta 280  Q
    |||||||||||||||   | ||||||||||||| ||||||||||||||||||| || | |||| ||||||    
T  6508473 accacatacattattaaataaatgaacctaaaatataaatttttgcttatattagtaaccggaggatgta 6508542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 3549905 - 3549793
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||| | |||||||||| ||||| |||||||||||||| ||||| |||||| |||  ||| || |||  ||||||||| ||||||  ||     
T  3549905 tataagcaaaaattaacattttaaattcattcattaaataatgtatgtggtctataataaagaccgtatatatcattaattgaatgaatctaaaatgtag 3549806  T
Q  249 atttttgcttata 261  Q
    |||||||||||||    
T  3549805 atttttgcttata 3549793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 21444287 - 21444215
Alignment:
Q  193 tatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttatattt 264  Q
    ||||||||||| |||||| |||||||| ||||||| || |||||| |||||| ||  ||||||||||||||||    
T  21444287 tatgttgtctataataaagaccacatatattatttattaaatgaatctaaaatatgtatttttgcttatattt 21444215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 52826166 - 52826246
Alignment:
Q  169 ttttaaattattcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaacataaa 249  Q
    |||||| ||||||||||||| ||||||||  |||  || || ||||||||||| |||| ||||||||||| |||| |||||    
T  52826166 ttttaatttattcaataaatgatgtatgtgatcttaaaaaagaccacatacatcatttattgaatgaaccaaaaaaataaa 52826246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 7037905 - 7037968
Alignment:
Q  223 attttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtatctttt 286  Q
    |||| ||||||||| |||||||||  |||||||||||||||||||| |||| || |||| ||||    
T  7037905 atttattgaatgaatctaaaacatggatttttgcttatatttgtgaccggaggaagtatgtttt 7037968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 26937995 - 26937868
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||||||||||||||||||||| || ||||||||| ||| |||||||  |||| || ||||  | |  | || | |||||| |||| |||||||||  ||    
T  26937995 gtcataaatataaacaaaaatttatgttttaaattcattaaataaatggtgtaagtggtctttattgtagacaatatacatcatttattgaatgaattta 26937896  T
Q  241 aaacataaatttttgcttatatttgtga 268  Q
    ||| || |||||||||||||||||||||    
T  26937895 aaatatgaatttttgcttatatttgtga 26937868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 31909791 - 31909877
Alignment:
Q  178 attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaacataaatttttgcttatattt 264  Q
    ||||||| ||| |||||||| ||||| | || ||||||||||||| |||  |||||||||||||||| |||||  |||||||||||||    
T  31909791 attcaattaatgatgtatgtggtctatattataaaccacatacatcattaattgaatgaacctaaaaaataaa-atttgcttatattt 31909877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 29070659 - 29070725
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaa 243  Q
    ||||||||||| |||||||| ||||| ||||   ||||||||||| |||| ||||||||||||||||    
T  29070659 attcaataaatgatgtatgtggtctataatatggaccacatacatcatttattgaatgaacctaaaa 29070725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 43384525 - 43384610
Alignment:
Q  178 attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaacataaatttttgcttatatt 263  Q
    ||||||| ||| |||||||| ||||| |||| ||||||||||||| |||  ||||||||| |||||| |||||  ||||||||||||    
T  43384525 attcaattaatgatgtatgtggtctataatataaaccacatacataattgattgaatgaatctaaaagataaa-atttgcttatatt 43384610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 48083568 - 48083518
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| ||||  ||||||||||||||| || ||||||||||||||    
T  48083568 accacatacatcatttaatgaatgaacctaaaatattaatttttgcttata 48083518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 5431468 - 5431355
Alignment:
Q  149 aatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaacata 247  Q
    ||||||| |||||||| |  ||||| ||| ||||||||||| |||||||| |||||||   | || |||||| | |||| ||||||||| ||||||  |     
T  5431468 aatataagcaaaaattaactttttagattcattcaataaatgatgtatgtggtctacacatagacaacatacttcatttattgaatgaatctaaaaagtg 5431369  T
Q  248 aatttttgcttata 261  Q
    ||||||||||||||    
T  5431368 aatttttgcttata 5431355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 23944103 - 23944026
Alignment:
Q  209 aaaccacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtatctttt 286  Q
    ||||||||||||| |||  ||||||| | |||||| || |||||||||||||||| |||| |||| | ||||| ||||    
T  23944103 aaaccacatacatcattaattgaatgtatctaaaaaatgaatttttgcttatattagtgaccggagggtgtatgtttt 23944026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 39940584 - 39940519
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaa 243  Q
    |||||||||||||||||||| ||||| |   |||||| |||||| |||| || |||||||||||||    
T  39940584 attcaataaataatgtatgtagtctatatataaaccatatacatcatttattaaatgaacctaaaa 39940519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 6340644 - 6340696
Alignment:
Q  209 aaaccacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    |||||||||| || |||| ||||||||||||||||  | ||||||||||||||    
T  6340644 aaaccacatatatcatttattgaatgaacctaaaaagttaatttttgcttata 6340696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 8258005 - 8257945
Alignment:
Q  213 cacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    |||||||||||||  ||||||| | ||||||  | ||||||||||||||||||||| ||||    
T  8258005 cacatacattattaattgaatgtatctaaaaagtgaatttttgcttatatttgtgaccgga 8257945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 8257949 - 8258081
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| ||||||||||  ||||| ||  ||||||| ||||||||||||    || |||||| ||||||||||| |||  ||||||| | |||    
T  8257949 gtcacaaatataagcaaaaattcactttttagatacattcaattaataatgtatgtgacatataataaagaccacatacatcattaattgaatgtatcta 8258048  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    |||  | |||||||||||||||| |||| ||||    
T  8258049 aaaagtgaatttttgcttatattagtgaccgga 8258081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 9501453 - 9501501
Alignment:
Q  213 cacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    |||||||||||||| |||||||||| |||||  ||||||| ||||||||    
T  9501453 cacatacattatttattgaatgaacttaaaaagtaaatttctgcttata 9501501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 14214607 - 14214655
Alignment:
Q  213 cacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||| |||| ||||||||||||||||  ||| ||||||||||||    
T  14214607 cacatacatcatttattgaatgaacctaaaaagtaagtttttgcttata 14214655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 14891752 - 14891864
Alignment:
Q  151 tataaacaaaaattcatattttaa-attattcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    |||||| ||||||  ||||||||| || ||||| ||||| |||||| | ||||| |||||| |||| |||||| |||| ||| || || ||||||  |||    
T  14891752 tataaagaaaaatcaatattttaagatcattcattaaatgatgtatatggtctataataaagaccatatacatcatttattggataaatctaaaatttaa 14891851  T
Q  249 atttttgcttata 261  Q
    |||||||||||||    
T  14891852 atttttgcttata 14891864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 21444198 - 21444270
Alignment:
Q  131 atacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtct 202  Q
    ||||| ||| || |||||||||||| ||||||| ||||||||| ||| ||| |||||||||| ||||| ||||    
T  21444198 atacaccctccaatcataaatataagcaaaaatacatattttagattcatttaataaataatatatgtggtct 21444270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 34184474 - 34184542
Alignment:
Q  176 ttattcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaa 243  Q
    |||||||||||||||||||||| ||||| ||||   | ||||||||| |||| |||||||||| |||||    
T  34184474 ttattcaataaataatgtatgtagtctataatatggatcacatacataatttattgaatgaacttaaaa 34184542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 34768356 - 34768404
Alignment:
Q  213 cacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    |||||||||||||| ||||||||||||||||  | || |||||||||||    
T  34768356 cacatacattatttgttgaatgaacctaaaaagtcaacttttgcttata 34768404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 52923401 - 52923449
Alignment:
Q  213 cacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||| |||| ||||||||||||||||  || |||||||||||||    
T  52923401 cacatacatcatttattgaatgaacctaaaaagtagatttttgcttata 52923449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 54106481 - 54106608
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| | ||||||||| |||| ||||||||| |||    
T  54106481 gtcacaaatataagcaaaaattcatattttagattcattcaataaatgatgtatgttgtctacaataaagatcacatacatcatttattgaatgaatcta 54106580  T
Q  241 aaacataaatttttgcttatatttgtga 268  Q
    ||||||||||||||||||||||||||||    
T  54106581 aaacataaatttttgcttatatttgtga 54106608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 52674822 - 52674950
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaa-taaa-accacatacattattttttgaatgaacct 239  Q
    |||| ||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||  |||| |||||||| || |||| ||||||||| ||    
T  52674822 gtcacaaatataaacaaaaatttatattttaaattcatttaataaattatgtatgttgtctacatgtaaagaccacataaatcatttattgaatgaatct 52674921  T
Q  240 aaaacataaatttttgcttatatttgtga 268  Q
    |||||||| ||||||||||||||||||||    
T  52674922 aaaacatacatttttgcttatatttgtga 52674950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 33558803 - 33558935
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| ||||||||||||||||| ||| || |||||||| || |||||||||| ||||||| ||||||||||| |||| |||||| || |||    
T  33558803 gtcacaaatataaccaaaaattcatattttagatttatacaataaatgatatatgttgtctgcaataaagaccacatacatcatttattgaataaatcta 33558902  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    ||||||| |||||||||||||| ||||| ||||    
T  33558903 aaacatatatttttgcttatatatgtgaccgga 33558935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 54922275 - 54922404
Alignment:
Q  146 ataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaa 243  Q
    ||||||||||  |||||||||||||||| ||  ||||||||||||||||||||| ||||||||||| |||||| || |||||| ||||||||| | ||||    
T  54922275 ataaatataagaaaaaattcatattttagatacattcaataaataatgtatgttatctacaataaagaccacaaactttatttattgaatgaatccaaaa 54922374  T
Q  244 cataaatttttgcttatatttgtgagcgga 273  Q
    |||  |||||| ||||||||||||| ||||    
T  54922375 catgtatttttacttatatttgtgaccgga 54922404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 4370534 - 4370402
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| ||||||||  |||||||||||||||| ||| || |||||||| ||||||| ||||||||||||| |||| |||||| |||| ||||||||| |||    
T  4370534 gtcacaaatataagtaaaaattcatattttagatttatgcaataaatgatgtatgatgtctacaataaagaccatatacatcatttattgaatgaatcta 4370435  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    ||| ||  |||||||||||||||||||| ||||    
T  4370434 aaatatggatttttgcttatatttgtgatcgga 4370402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 20598263 - 20598395
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| ||||||||||| ||||| ||  ||||||||||| |||||| |||||||||||||| |||||||| || |||| ||||||||| |||    
T  20598263 gtcacaaatataagcaaaaattcatgttttagatacattcaataaatgatgtatattgtctacaataaagaccacatatatcatttattgaatgaatcta 20598362  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    ||||||  ||||||| |||||||||||| ||||    
T  20598363 aaacatggatttttgtttatatttgtgaccgga 20598395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 54508176 - 54508252
Alignment:
Q  144 tcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacata 218  Q
    |||||||||||| |||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  54508176 tcataaatataagcaaaaatttatattttagattcattcaataaatgatgtatgttgtctacaataaagaccacata 54508252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 12596739 - 12596671
Alignment:
Q  212 ccacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgta 280  Q
    ||||||||||||||| || ||||||  ||||| |||||||||||||||||||||||| ||||| |||||    
T  12596739 ccacatacattatttattaaatgaatttaaaaaataaatttttgcttatatttgtgaccggataatgta 12596671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 268
Target Start/End: Original strand, 44239801 - 44239917
Alignment:
Q  154 aaacaaaaattcatattttaaatta-ttcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatt 251  Q
    |||||||||||||||||||| |||| || ||||||| || ||||||||||| | |||| | || |||||| |||| ||| |||||  |||||||||||||    
T  44239801 aaacaaaaattcatattttagattaatttaataaatgatatatgttgtctatactaaagatcatatacatcatttattggatgaatttaaaacataaatt 44239900  T
Q  252 tttgcttatatttgtga 268  Q
    |||| ||||||| ||||    
T  44239901 tttgtttatattcgtga 44239917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 20598391 - 20598252
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||||||||||| ||| ||||| ||| ||||||||||| || ||||| ||||  | |  | || | |||||| |||| ||||||| | |||    
T  20598391 gtcacaaatataaacaaaaatccatgttttagattcattcaataaatgatatatgtggtctttattgtagacaatatacatcatttattgaatgtatcta 20598292  T
Q  241 aaacataaatttttgcttatatttgtgagcggatgatgta 280  Q
    |||||| ||||||||||||||||||||| |||||| ||||    
T  20598291 aaacatgaatttttgcttatatttgtgaccggatggtgta 20598252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 4406281 - 4406367
Alignment:
Q  176 ttattcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||| ||||| |||||||| ||||| |||||| ||||||||||| |||  ||||||||| | |||| |||||||||||||||||    
T  4406281 ttattcattaaatgatgtatgtggtctataataaagaccacatacatcattaattgaatgaatccaaaatataaatttttgcttata 4406367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 281
Target Start/End: Complemental strand, 13689664 - 13689530
Alignment:
Q  149 aatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaac-cacatacattattttttgaatgaacctaaaacat 246  Q
    ||||||| ||||||||||  ||||| ||| ||||||| |||||||||||||||||  | || |   ||||||||| |||  ||||||| | |||||| ||    
T  13689664 aatataagcaaaaattcactttttagattcattcaattaataatgtatgttgtctttattatatgtcacatacatcattaattgaatgtatctaaaaaat 13689565  T
Q  247 aaatttttgcttatatttgtgagcggatgatgtat 281  Q
    | ||||||||||||||| |||| ||||||||||||    
T  13689564 agatttttgcttatattagtgaccggatgatgtat 13689530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 41905875 - 41905920
Alignment:
Q  223 attttttgaatgaacctaaaacataaatttttgcttatatttgtga 268  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||    
T  41905875 atttattgaatgaacctaaaacatgaatttttgcttatatttgtga 41905920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 54106609 - 54106477
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| |||||||| || ||||| ||| ||||||||||| ||||||||  |||  | |  | || |||||||| |||| ||||||||| |||    
T  54106609 gtcacaaatataagcaaaaatttatgttttagattcattcaataaatgatgtatgtgatctttattgtagacaacatacatcatttattgaatgaatcta 54106510  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    ||| || ||||||||||||||||||||| ||||    
T  54106509 aaatatgaatttttgcttatatttgtgaccgga 54106477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 52674877 - 52674810
Alignment:
Q  214 acatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtat 281  Q
    |||||||| |||| || ||||||  ||||| ||||||||||| |||||||||||| ||||||||||||    
T  52674877 acatacataatttattaaatgaatttaaaatataaatttttgtttatatttgtgaccggatgatgtat 52674810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 54508230 - 54508171
Alignment:
Q  214 acatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    |||||||| |||| ||||||||| |||||| |||||||||||||||||||| ||| ||||    
T  54508230 acatacatcatttattgaatgaatctaaaatataaatttttgcttatatttatgatcgga 54508171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 281
Target Start/End: Complemental strand, 3504177 - 3504071
Alignment:
Q  176 ttattcaataaataatgtatgttgtctacaa-taaaaccacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggat 274  Q
    |||||||||||||||||||||| | ||| || ||||||  ||||||| |||  ||||||||| |||||| || |||||||| ||||||| ||||  ||||    
T  3504177 ttattcaataaataatgtatgtagcctataattaaaactgcatacatcattaattgaatgaatctaaaaaatgaatttttgtttatattagtgattggat 3504078  T
Q  275 gatgtat 281  Q
    | |||||    
T  3504077 ggtgtat 3504071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 16040106 - 16040040
Alignment:
Q  131 atacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgt 197  Q
    ||||| ||| ||||||||||||||| |||||||| || ||||||||| ||||||||||| ||||||||    
T  16040106 atacaccctccagtcataaatataagcaaaaatttat-ttttaaattcattcaataaatgatgtatgt 16040040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 29006897 - 29006830
Alignment:
Q  213 cacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgta 280  Q
    ||||||||| |||| ||||||||| |||||| ||| ||||||||||||| | |||| |||||| ||||    
T  29006897 cacatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgaccggatggtgta 29006830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 35005126 - 35005181
Alignment:
Q  206 ataaaaccacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    |||| |||||||||||||||| ||||||||| ||||||  | ||||||||||||||    
T  35005126 ataagaccacatacattatttattgaatgaatctaaaaattgaatttttgcttata 35005181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 52914124 - 52914013
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||| |||||||| ||| ||||| ||||| |||||||| ||||| |||||| || | |||||| ||||  |||||||| ||||||  | |    
T  52914124 tataagcaaaaattaatattttagattcattcattaaatgatgtatgtggtctataataaagactatatacatcatttcatgaatgaatctaaaatgtta 52914025  T
Q  249 atttttgcttat 260  Q
    ||||||||||||    
T  52914024 atttttgcttat 52914013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 19934714 - 19934764
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| |||| ||||||||| |||||| ||| |||||||||||||    
T  19934714 accacatacatcatttattgaatgaatctaaaaaatagatttttgcttata 19934764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 20215631 - 20215581
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| |||| ||||||||||||||||  | ||||||||||||||    
T  20215631 accacatacatcatttattgaatgaacctaaaatgtcaatttttgcttata 20215581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 54164889 - 54164939
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| |||| ||||||||| |||||| ||| |||||||||||||    
T  54164889 accacatacatcatttattgaatgaatctaaaaaatagatttttgcttata 54164939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 54787080 - 54787014
Alignment:
Q  178 attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaa 243  Q
    ||||||| ||| |||||||| ||||| |||| ||||||||||||| |||  ||||||||||||||||    
T  54787080 attcaatcaatgatgtatgtggtctataatataaaccacatacatcattgattgaatgaacctaaaa 54787014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 2440974 - 2440905
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgta 280  Q
    ||||||||||| |||   | ||||||||||||| |||| |||||||||||||| |||| |||||| ||||    
T  2440974 accacatacatcattaaataaatgaacctaaaatataattttttgcttatattagtgatcggatggtgta 2440905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 22586831 - 22586718
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataa-aaccacatacattattttttgaatgaacctaaaacataa 248  Q
    |||||||||||||| |||||||| ||| | |||||||||||| |||||  |||  ||||  |||||||||||| |||| ||||| ||| |||||| || |    
T  22586831 tataaacaaaaattaatattttagatttagtcaataaataatatatgtgatcttaaatattaaccacatacatcatttattgaacgaatctaaaatatta 22586732  T
Q  249 atttttgcttatat 262  Q
    | ||||| ||||||    
T  22586731 aattttgtttatat 22586718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 48414912 - 48414875
Alignment:
Q  231 aatgaacctaaaacataaatttttgcttatatttgtga 268  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  48414912 aatgaacctaaaatataaatttttgcttatattagtga 48414875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 21587016 - 21586932
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaaac-cacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| |||||||| ||||| |||| |   ||||||||| |||| ||||||  |||||||| ||||| |||||||||||    
T  21587016 attcaataaatgatgtatgtagtctataatataggacacatacatcatttattgaatttacctaaaaaataaacttttgcttata 21586932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 29779720 - 29779847
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| ||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||| ||||||| ||| |||| || ||||||| ||    
T  29779720 gtcacaaatataaacaaaaattcatattatagattcattcaataaatgatgtatgttgtctacaataaagaccacatgcatcatttattaaatgaacata 29779819  T
Q  241 aaacataaatttttgcttatatttgtga 268  Q
    ||||||||||||||||||||||||||||    
T  29779820 aaacataaatttttgcttatatttgtga 29779847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 31417560 - 31417663
Alignment:
Q  179 ttcaataaataatgtatgttgtctacaataaaac-cacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgat 277  Q
    |||||||||| |||||| |||||||||||||||  ||||||||| |||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  31417560 ttcaataaatgatgtatattgtctacaataaaaatcacatacatcatttattgaatgaatctaaaacatgaatttttgcttatatttgtgaccggatgat 31417659  T
Q  278 gtat 281  Q
    ||||    
T  31417660 gtat 31417663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 14995999 - 14995867
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatta-ttcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| ||||||||||||||||| |||  |||||||||| ||| ||||||||||||||||| |||||||| || |||| |||||||||  ||    
T  14995999 gtcacaaatataagcaaaaattcatattttagattcgttcaataaatgatgcatgttgtctacaataaagaccacatatatcatttattgaatgaattta 14995900  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    ||||||  |||||||||||||||||||| ||||    
T  14995899 aaacattgatttttgcttatatttgtgaccgga 14995867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 273
Target Start/End: Complemental strand, 44416665 - 44416534
Alignment:
Q  144 tcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaa 241  Q
    ||||||||||||||||||||| |||||||| ||| ||||||| ||| |||||||||||||||||||||  | |||||||| |||  ||||||||| ||||    
T  44416665 tcataaatataaacaaaaatttatattttagattcattcaattaattatgtatgttgtctacaataaagtctacatacatcattcattgaatgaatctaa 44416566  T
Q  242 aacataaatttttgcttatatttgtgagcgga 273  Q
    ||||| |||||||| |||||||| ||| ||||    
T  44416565 aacatgaatttttgtttatatttatgaccgga 44416534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 15051089 - 15051221
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaac-cacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| |||||||| || ||||| ||  ||||||||||| |||||| ||||||||||||||   |||||||||||||| |||||||||  ||    
T  15051089 gtcacaaatataagcaaaaatttatgttttagatacattcaataaatgatgtatattgtctacaataaaggtcacatacattatttattgaatgaattta 15051188  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    |||||| ||||||||||||||||||||| ||||    
T  15051189 aaacatgaatttttgcttatatttgtgaccgga 15051221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 22752566 - 22752691
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaac-cacatacattattttttgaatgaaccta 240  Q
    ||||||||||||| |||||||| |||||||| ||| |||||||||||||||||| || | || |||||||  ||||||||| |||| ||||||||| |||    
T  22752566 gtcataaatataagcaaaaatttatattttagattcattcaataaataatgtatattatttataataaaaatcacatacataatttattgaatgaatcta 22752665  T
Q  241 aaacataaatttttgcttatatttgt 266  Q
    |||| || |||||| |||||||||||    
T  22752666 aaacctatattttttcttatatttgt 22752691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 15051217 - 15051085
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||   ||  | |  | || | |||||| |||| ||||||| | |||    
T  15051217 gtcacaaatataagcaaaaattcatgttttaaattcattcaataaataatgtatgtgacctttattgtagacaatatacatcatttattgaatgtatcta 15051118  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    |||||||||||||||||||||||||||| ||||    
T  15051117 aaacataaatttttgcttatatttgtgaccgga 15051085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 257
Target Start/End: Original strand, 27242418 - 27242536
Alignment:
Q  141 cagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacc 238  Q
    |||||| |||| |||||||||| | ||| |||| ||| ||||||| ||| |||||||||||||| |||||| ||||||| ||| |||| ||||||||| |    
T  27242418 cagtcacaaatttaaacaaaaaattatactttagattcattcaatgaatgatgtatgttgtctataataaagaccacatgcatcatttattgaatgaatc 27242517  T
Q  239 taaaacataaatttttgct 257  Q
    ||||||||  |||||||||    
T  27242518 taaaacatggatttttgct 27242536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 35216483 - 35216592
Alignment:
Q  144 tcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaa 241  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||| || |||||||| |||| |||| ||||||||||| ||||  | ||||||  |||    
T  35216483 tcataaatataaacaaaaatttatattttagattcattcaataaatgatatatgttgtttacagtaaagaccacatacatcatttactaaatgaatttaa 35216582  T
Q  242 aacataaatt 251  Q
    ||||| ||||    
T  35216583 aacatgaatt 35216592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 24934677 - 24934573
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||||||||||| || ||||||  || |||||||||||||||||  | ||||||| || ||||||||||||| |||| ||||||||||||||||  |||    
T  24934677 tataaacaaaaatccacattttatgttcattcaataaataatgtacatggtctacattataaaccacatacatcatttattgaatgaacctaaaatgtaa 24934578  T
Q  249 atttt 253  Q
    |||||    
T  24934577 atttt 24934573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 22752619 - 22752554
Alignment:
Q  216 atacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtat 281  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||||| ||| ||  ||||||||    
T  22752619 atacattatttattgaatgaatctaaaatataaatttttgcttatatttatgaccgactgatgtat 22752554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 44416538 - 44416670
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaat-aaaaccacatacattattttttgaatgaaccta 240  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||| ||| |||||||| | ||  | |  | || |||||||| |||  ||||||||| |||    
T  44416538 gtcataaatataaacaaaaattcatgttttagattcattcaatgaatgatgtatgtagactttattgtagacaacatacataattaattgaatgaatcta 44416637  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    ||| ||||||||||| |||||||| ||| ||||    
T  44416638 aaatataaatttttgtttatatttatgatcgga 44416670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 26385639 - 26385749
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    |||||||||| ||| | |||||| ||| ||||||||||| |||||||| ||||| |||||| ||||||||||| |||  || |||||| || |||  |||    
T  26385639 tataaacaaagatttacattttagattcattcaataaattatgtatgtggtctataataaagaccacatacatcattaattaaatgaatcttaaatgtaa 26385738  T
Q  249 atttttgctta 259  Q
    |||||||||||    
T  26385739 atttttgctta 26385749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 2943254 - 2943338
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||| ||||| |||||||| |||||||||||| |  ||||||||||||  |||||||||  ||||| |||| ||||||||||||    
T  2943254 attcattaaatgatgtatgtggtctacaataaagagtacatacattattaattgaatgaatgtaaaatataattttttgcttata 2943338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 12274851 - 12274935
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| |||||||| | ||| |||| | |||||||||||||| | ||||||||| ||||||  || |||||||||||||    
T  12274851 attcaataaatgatgtatgtggcctataatatagaccacatacattatatattgaatgaatctaaaaagtacatttttgcttata 12274935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 38940338 - 38940234
Alignment:
Q  158 aaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaacataaatttttgc 256  Q
    |||||||||  ||||||||| ||| ||||||| |||||||| ||||| |   | ||||||| |||||||| ||||||||| ||||||  | |||||||||    
T  38940338 aaaaattcactttttaaattcatttaataaatgatgtatgtagtctatatatagaccacattcattatttattgaatgaatctaaaatgtcaatttttgc 38940239  T
Q  257 ttata 261  Q
    |||||    
T  38940238 ttata 38940234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 39970284 - 39970189
Alignment:
Q  149 aatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaa 243  Q
    ||||||||||||  || || ||||||||| ||||||| ||| |||||||| ||||| |||| ||||||||||||| |||  ||||||||||||||||    
T  39970284 aatataaacaaattttaat-ttttaaattcattcaatcaatgatgtatgtggtctataatataaaccacatacatcattgattgaatgaacctaaaa 39970189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 48440009 - 48440057
Alignment:
Q  213 cacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||| |||||||| |||||||||||||||| || ||||||||||||||    
T  48440009 cacatgcattatttattgaatgaacctaaaatattaatttttgcttata 48440057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 8595208 - 8595149
Alignment:
Q  214 acatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    |||||||| ||||  |||||||| |||||| |||||||||| ||||||||||||| ||||    
T  8595208 acatacatcatttaatgaatgaatctaaaaaataaattttttcttatatttgtgaccgga 8595149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 35641492 - 35641542
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgt 200  Q
    |||||||||||||| |||||||| ||| ||||||||||| |||||||||||    
T  35641492 tataaacaaaaatttatattttacattcattcaataaatgatgtatgttgt 35641542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 47300115 - 47300057
Alignment:
Q  186 aataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaa 243  Q
    |||||||||||| ||| |||||| |||||||||||||||||  |||||||||| |||||    
T  47300115 aataatgtatgtggtccacaatataaaccacatacattattaattgaatgaacttaaaa 47300057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 8169194 - 8169129
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaa 243  Q
    ||||||||||| |||||||| ||||| |   | ||||||||||| |||| ||||||||||||||||    
T  8169194 attcaataaatgatgtatgtagtctatatatagaccacatacatcatttattgaatgaacctaaaa 8169129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 10599069 - 10599118
Alignment:
Q  212 ccacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    |||||||||| |||| |||||||||||||||| ||| |||||| ||||||    
T  10599069 ccacatacatcatttattgaatgaacctaaaaaatagatttttacttata 10599118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 19688218 - 19688113
Alignment:
Q  158 aaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaacataaatttttg 255  Q
    ||||| ||| |||||| ||| ||| ||||||| |||||||| |||||||  | |||| |||||||| |||| ||||||||||||||||  ||  ||||||    
T  19688218 aaaaaatcacattttagattcatttaataaatgatgtatgtggtctacataataaactacatacatcatttattgaatgaacctaaaatgtatttttttg 19688119  T
Q  256 cttata 261  Q
    ||||||    
T  19688118 cttata 19688113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 12171334 - 12171254
Alignment:
Q  184 taaataatgtatgttgtctacaataaaacc-acatacattattttttgaatgaacctaaaacataaatttttgcttatatt 263  Q
    ||||| |||||||| ||||| ||||||| | |||||| ||||||  |||||||| ||||||   |||||||||||||||||    
T  12171334 taaatgatgtatgtagtctataataaaatctacatacgttatttaatgaatgaatctaaaaatcaaatttttgcttatatt 12171254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 37930775 - 37930843
Alignment:
Q  212 ccacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgta 280  Q
    ||||||||||||||| |  |||||| |||||| || |||||||| ||||| | |||| |||||||||||    
T  37930775 ccacatacattatttatcaaatgaatctaaaatattaatttttgtttataatagtgaccggatgatgta 37930843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 47778537 - 47778461
Alignment:
Q  169 ttttaaatt-attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaa 243  Q
    ||||||||| ||||||| ||| |||||||| ||| | |||| ||| |||||||||||||  ||||||||||||||||    
T  47778537 ttttaaattcattcaattaatgatgtatgtagtcgataatataaatcacatacattattaattgaatgaacctaaaa 47778461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 132 - 268
Target Start/End: Complemental strand, 3012505 - 3012367
Alignment:
Q  132 tacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattatttttt 229  Q
    |||| ||| ||||||||||||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||| ||||||||| ||||||||||| |||| ||    
T  3012505 tacacccttcagtcataaatataagcaaaaattcatgttttagattcattcaataaatgatgtatgttgtttacaataaagaccacatacatcatttatt 3012406  T
Q  230 gaatgaacctaaaacataaatttttgcttatatttgtga 268  Q
    |||||| ||||||||||  ||||||||||||||||||||    
T  3012405 gaatgatcctaaaacattgatttttgcttatatttgtga 3012367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 7158389 - 7158263
Alignment:
Q  144 tcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaa 241  Q
    |||||||||| | ||||| ||||||||||| ||| ||||||||||| |||||| |||||||||||||| ||||||||||| |||| |||||| || ||||    
T  7158389 tcataaatattagcaaaagttcatattttagattcattcaataaatgatgtatattgtctacaataaagaccacatacatcatttattgaataaatctaa 7158290  T
Q  242 aacataaatttttgcttatatttgtga 268  Q
    |||||| ||||||||||||||||||||    
T  7158289 aacatagatttttgcttatatttgtga 7158263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 8030449 - 8030327
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    ||||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| || ||||||  ||    
T  8030449 gtcataaatataagcaaaaatttatcttttaaattcattcaataaataatgtatgttgtctacaataaagaccacatacgttatttatttaatgaa-tta 8030351  T
Q  241 aaacataaatttttgcttatattt 264  Q
    |||||| ||||||| |||||||||    
T  8030350 aaacatgaatttttacttatattt 8030327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 15836545 - 15836677
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaac-cacatacattattttttgaatgaaccta 240  Q
    ||||||||||||| |||||||||||||| || ||| ||||||||||| ||||||||||||||||||| |   ||||||||| |||| ||||||||| |||    
T  15836545 gtcataaatataagcaaaaattcatattgtagattcattcaataaatgatgtatgttgtctacaatataggtcacatacatcatttattgaatgaatcta 15836644  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    ||||||  |||||| ||||||||||||| ||||    
T  15836645 aaacatgtatttttacttatatttgtgaccgga 15836677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 33053863 - 33053767
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||| |||| ||||||||| |||||||||| |||||| ||||||||||||| ||||    
T  33053863 attcaataaatgatgtatgttgtctacaataaagatcacatacatcatttattgaatgaatctaaaacatagattttttcttatatttgtgaccgga 33053767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 2990562 - 2990688
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    ||||||||||||| |||||||||||||||||||||  || ||||||||| ||||||||| || |||||| || ||||| || | || |||||||||| ||    
T  2990562 gtcataaatataagcaaaaattcatattttaaattcgtttaataaataaagtatgttgtttagaataaagactacatatatca-ttattgaatgaacgta 2990660  T
Q  241 aaacataaatttttgcttatatttgtga 268  Q
    |||||| || |||||||||||| |||||    
T  2990661 aaacatgaagttttgcttatatatgtga 2990688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 13276550 - 13276488
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  13276550 accacatacatcatttattgaatgaacctaaaacatgaatttttgcttatatttgtgaccgga 13276488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 13277169 - 13277088
Alignment:
Q  130 catacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa 210  Q
    |||||| ||| | |||| ||||||||||||||||| |||||||| ||| ||||||||||| ||||||||||||||| |||||    
T  13277169 catacaccctccggtcacaaatataaacaaaaatttatattttagattcattcaataaatgatgtatgttgtctaccataaa 13277088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 4808339 - 4808271
Alignment:
Q  197 ttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttatattt 264  Q
    |||||||||||||| ||||||||||| |||| || |||||||||||||||| ||||||| |||||||||    
T  4808339 ttgtctacaataaagaccacatacatcatttatttaatgaacctaaaacattaattttttcttatattt 4808271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 8030325 - 8030444
Alignment:
Q  146 ataaatataaacaaaaattcatattttaaattattcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaac 244  Q
    ||||||||||  |||||||||| |||||| | ||| ||||||||| |||||| ||||  | |  | || ||||||||||||| |||||||||  |||||     
T  8030325 ataaatataagtaaaaattcatgttttaattcattaaataaataacgtatgtggtctttattgtagacaacatacattatttattgaatgaatttaaaag 8030424  T
Q  245 ataaatttttgcttatattt 264  Q
    ||||||||||||||||||||    
T  8030425 ataaatttttgcttatattt 8030444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 3012434 - 3012489
Alignment:
Q  209 aaaccacatacattattttttgaatgaacctaaaacataaatttttgcttatattt 264  Q
    |||| |||||||| |||| ||||||||| ||||||||| |||||||||||||||||    
T  3012434 aaacaacatacatcatttattgaatgaatctaaaacatgaatttttgcttatattt 3012489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 13277101 - 13277160
Alignment:
Q  214 acatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    |||||||| |||| ||||||||| |||||| ||||||||||| |||||||||||| ||||    
T  13277101 acatacatcatttattgaatgaatctaaaatataaatttttgtttatatttgtgaccgga 13277160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 6033061 - 6032980
Alignment:
Q  181 caataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    |||||||| |||||||| ||||| | |||| |||||||||||||||| || |||||| |||||| || ||||||| ||||||    
T  6033061 caataaatgatgtatgtagtctatattaaagaccacatacattatttattaaatgaatctaaaatatcaatttttacttata 6032980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 13462975 - 13463058
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| ||||||||  |||| |   ||||||||||||| ||||  |||||||||||||||  | ||||||||||||||    
T  13462975 attcaataaatgatgtatgtaatctatatataaaccacatacatcatttaatgaatgaacctaaaaagtcaatttttgcttata 13463058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 15836600 - 15836534
Alignment:
Q  214 acatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgta 280  Q
    |||||||| |||| ||||||||| ||| || || ||||||||||||||||| ||| |||||| ||||    
T  15836600 acatacatcatttattgaatgaatctacaatatgaatttttgcttatatttatgaccggatggtgta 15836534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 32254869 - 32254947
Alignment:
Q  184 taaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||| |||||||| ||||| |||||| ||||||||||| ||||  |||||||| |||||| || || |||||||||||    
T  32254869 taaatgatgtatgtagtctataataaagaccacatacatcatttaatgaatgaatctaaaatattaacttttgcttata 32254947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 33689321 - 33689223
Alignment:
Q  184 taaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtat 281  Q
    ||||| |||||||| ||||| |||||| || | ||||||||||  |||||||||  ||||| ||  ||||||||||||| | |||| ||||||||||||    
T  33689321 taaatgatgtatgtagtctataataaatactatatacattattaattgaatgaatataaaatattgatttttgcttataatagtgaccggatgatgtat 33689223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 261
Target Start/End: Original strand, 6032987 - 6033092
Alignment:
Q  158 aaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttg 255  Q
    ||||||| |||||||| ||| ||| |||||||||||||||| ||||  |||| | || |||||||| |||| ||| |||||||||||| || ||  ||||    
T  6032987 aaaaattgatattttagattcatttaataaataatgtatgtggtctttaatatagactacatacatcatttattggatgaacctaaaatattaaaatttg 6033086  T
Q  256 cttata 261  Q
    ||||||    
T  6033087 cttata 6033092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 16199186 - 16199117
Alignment:
Q  209 aaaccacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatg 278  Q
    ||||| ||||||| ||||  |||||||||||||||  || ||||||||||||| | |||| |||||||||    
T  16199186 aaaccgcatacatcatttaatgaatgaacctaaaatgtagatttttgcttataatagtgaccggatgatg 16199117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 16465554 - 16465626
Alignment:
Q  184 taaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttg 255  Q
    |||||||||||||| ||| | |||||| |||| || ||| |||| || ||||||||||||| |||||||||||    
T  16465554 taaataatgtatgtagtccataataaataccatatgcatcatttattaaatgaacctaaaatataaatttttg 16465626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 26527316 - 26527204
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||| | |||||| ||| ||||| ||||| |||||||| || || |||||| || |||||||||||||| |||||| | ||||||  |      
T  26527316 tataagcaaaaattaacattttagattcattcattaaatgatgtatgtggtttataataaagactacatacattattttatgaatgtatctaaaatgttg 26527217  T
Q  249 atttttgcttata 261  Q
    |||||||||||||    
T  26527216 atttttgcttata 26527204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 33018999 - 33018939
Alignment:
Q  221 ttattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtat 281  Q
    |||||| || |||||| |||||| || ||||||| ||||||||||||| |||| |||||||    
T  33018999 ttatttattaaatgaatctaaaatatgaatttttacttatatttgtgatcggaggatgtat 33018939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 132 - 268
Target Start/End: Complemental strand, 7981290 - 7981152
Alignment:
Q  132 tacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattatttttt 229  Q
    |||||||| | |||| |||||||| |||||||| |||||||| ||| ||||||||||| || |||||||||||||||||| ||||||| ||| |||| ||    
T  7981290 tacatcctccggtcacaaatataagcaaaaatttatattttagatttattcaataaatgatatatgttgtctacaataaagaccacatgcatcatttatt 7981191  T
Q  230 gaatgaacctaaaacataaatttttgcttatatttgtga 268  Q
    |||||||||||||| || |||||||||||||||||||||    
T  7981190 gaatgaacctaaaatatgaatttttgcttatatttgtga 7981152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 280
Target Start/End: Original strand, 27707170 - 27707323
Alignment:
Q  129 acatacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattt 226  Q
    ||||||||||| |  ||| |||||||| ||||||||||||||||||||| ||||||||||| || ||| |||||||||||||| ||||||||||| ||||    
T  27707170 acatacatcctccgatcacaaatataagcaaaaattcatattttaaattcattcaataaatgatatatattgtctacaataaagaccacatacatcattt 27707269  T
Q  227 tttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgta 280  Q
     ||||||||| ||||||||   |||| ||||||||||||||| |||| ||||||    
T  27707270 attgaatgaatctaaaacacgtatttctgcttatatttgtgatcggaggatgta 27707323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 4980267 - 4980398
Alignment:
Q  131 atacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttt 228  Q
    |||||||||  |||||||||||||| ||||||||||||||||| ||| ||||||||||| || ||||||||||| |||||| || |||||||| |||| |    
T  4980267 atacatcctctagtcataaatataagcaaaaattcatattttagattcattcaataaatgatatatgttgtctataataaagactacatacatcatttat 4980366  T
Q  229 tgaatgaacctaaaacataaatttttgcttat 260  Q
    |||||||| |||||| || |||||||||||||    
T  4980367 tgaatgaatctaaaatatgaatttttgcttat 4980398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 148 - 281
Target Start/End: Original strand, 35572011 - 35572146
Alignment:
Q  148 aaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaaca 245  Q
    |||||||| ||||||||||||||||| ||| ||||||||||  ||| ||||| ||||||||||| ||||||||||  |||| ||||||||||| ||||||    
T  35572011 aaatataatcaaaaattcatattttagattcattcaataaacgatgcatgttctctacaataaagaccacatacaacatttattgaatgaacccaaaaca 35572110  T
Q  246 taaatttttgcttatatttgtgagcggatgatgtat 281  Q
    | ||||||||||||||||| ||| |||||| |||||    
T  35572111 tgaatttttgcttatatttatgaccggatggtgtat 35572146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 148 - 284
Target Start/End: Original strand, 31706624 - 31706762
Alignment:
Q  148 aaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaaca 245  Q
    |||||||| ||||||||||||||||| ||| |||||||| || ||||||||||||||||||||| |||||||||||  ||| |||||| || ||||||||    
T  31706624 aaatataagcaaaaattcatattttagattcattcaatatatgatgtatgttgtctacaataaagaccacatacatcgtttattgaataaatctaaaaca 31706723  T
Q  246 taaatttttgcttatatttgtgagcggatgatgtatctt 284  Q
      | ||||||||||||||||| | |||| ||| ||||||    
T  31706724 agattttttgcttatatttgtaaccggaggatatatctt 31706762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 264
Target Start/End: Original strand, 26367477 - 26367604
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-----accacatacattattttttgaatgaa 236  Q
    |||| |||||||| ||||||| ||| ||||| ||| ||||||||||| |||||||||||||||||| ||     ||||||||||| |||| |||||||||    
T  26367477 gtcacaaatataagcaaaaatccatgttttagattcattcaataaatgatgtatgttgtctacaattaataaagaccacatacatcatttattgaatgaa 26367576  T
Q  237 cctaaaacataaatttttgcttatattt 264  Q
     |||||||||  ||||||||||||||||    
T  26367577 tctaaaacattgatttttgcttatattt 26367604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 22406000 - 22405919
Alignment:
Q  146 ataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattatt 225  Q
    |||||||||| ||||| ||||||||||  ||| ||||||||||||||||||||||| |||| |||| |||||||||||||||    
T  22406000 ataaatataagcaaaacttcatattttttatttattcaataaataatgtatgttgtttacagtaaagaccacatacattatt 22405919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 286
Target Start/End: Complemental strand, 4980398 - 4980262
Alignment:
Q  152 ataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaa 249  Q
    |||| ||||||||||||||||| ||| ||||||||||| |||||||| ||||  | || | || ||||| || |||| ||||||||| |||||| || ||    
T  4980398 ataagcaaaaattcatattttagattcattcaataaatgatgtatgtagtctttattatagacaacatatatcatttattgaatgaatctaaaatatgaa 4980299  T
Q  250 tttttgcttatatttgtgagcggatgatgtatctttt 286  Q
    ||||||||||||||| |||   || ||||||||||||    
T  4980298 tttttgcttatatttatgactagaggatgtatctttt 4980262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 7981151 - 7981290
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| |||||||||||||||||  || ||||||||||| ||| |||| ||||  | |  | || ||||| || |||| |||||| || |||    
T  7981151 gtcacaaatataagcaaaaattcatattttaggttcattcaataaatgatgcatgtggtctttattgtagacaacatatatcatttattgaataaatcta 7981250  T
Q  241 aaacataaatttttgcttatatttgtgagcggatgatgta 280  Q
    ||| |||||||||||||||||||||||| |||| ||||||    
T  7981251 aaatataaatttttgcttatatttgtgaccggaggatgta 7981290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 273
Target Start/End: Complemental strand, 26367620 - 26367473
Alignment:
Q  132 tacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-----accacatacattatt 225  Q
    |||| ||| ||||||||||||||| |||||||  || ||||| ||| ||||||||||| |||||||| ||||  | |||      || |||||||| |||    
T  26367620 tacaccctccagtcataaatataagcaaaaatcaatgttttagattcattcaataaatgatgtatgtggtctttattaattgtagacaacatacatcatt 26367521  T
Q  226 ttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    | ||||||||| |||||||||  |||||||||||||||||||| ||||    
T  26367520 tattgaatgaatctaaaacatggatttttgcttatatttgtgaccgga 26367473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 10872686 - 10872798
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||  |||||||||||| ||||| ||||| ||||||||  | || |||||| |||| |||||| |||  ||||||||| |||||| ||||    
T  10872686 tataagcaaaaatcaatattttaaattcattcattaaatgatgtatgtgatttataataaagaccatatacatcattaattgaatgaatctaaaatataa 10872785  T
Q  249 atttttgcttata 261  Q
    |||||||||||||    
T  10872786 atttttgcttata 10872798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 2128437 - 2128487
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||| |||| ||||||||| ||||||||| ||||||||||||||    
T  2128437 accacatacatcatttattgaatgaatctaaaacatgaatttttgcttata 2128487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 24597010 - 24596905
Alignment:
Q  158 aaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaacataaatttttg 255  Q
    ||||||||||||||||| || ||| |||||||||||||| |  |||||| || ||| |||||||||  ||| ||||||||| ||||||  |||||||||     
T  24597010 aaaaattcatattttaagttcattgaataaataatgtatataatctacattataaatcacatacatcgtttattgaatgaatctaaaatgtaaattttta 24596911  T
Q  256 cttata 261  Q
    ||||||    
T  24596910 cttata 24596905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 50603590 - 50603659
Alignment:
Q  212 ccacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtat 281  Q
    |||||||||| |||| |||||||||| ||||| ||| ||||||||||||| | |||| || |||||||||    
T  50603590 ccacatacatcatttattgaatgaacttaaaaaatagatttttgcttataatagtgaccgaatgatgtat 50603659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 51253684 - 51253796
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaac-cacatacattattttttgaatgaacctaaaacataa 248  Q
    |||||||||||||  |||||||||||  ||| | ||||| |||||||||||||| ||||||   || ||||||||||  ||||||||| ||| || || |    
T  51253684 tataaacaaaaatcaatattttaaatccatttattaaatgatgtatgttgtctataataaagttcatatacattattgattgaatgaatctacaatatta 51253783  T
Q  249 atttttgcttata 261  Q
    |||||||||||||    
T  51253784 atttttgcttata 51253796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 5919454 - 5919520
Alignment:
Q  158 aaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacatt 222  Q
    |||||||| ||||||| ||| ||||||||||| ||||||||||| ||||||||| ||||||| ||||    
T  5919454 aaaaattcgtattttagattcattcaataaatgatgtatgttgtttacaataaagaccacatgcatt 5919520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 10841797 - 10841711
Alignment:
Q  176 ttattcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||| ||||||| |||||||| |||||  ||| | ||||||||||  |||| ||||||||| |||| || ||||||||||||||||    
T  10841797 ttatttaataaatgatgtatgtagtctaatatatagaccacatacaacatttattgaatgaatctaatacgtaaatttttgcttata 10841711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 27707230 - 27707172
Alignment:
Q  223 attttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtat 281  Q
    |||| |||||||||  ||||| || ||||||||||||||||||||| |||| |||||||    
T  27707230 atttattgaatgaatttaaaatatgaatttttgcttatatttgtgatcggaggatgtat 27707172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 31706674 - 31706620
Alignment:
Q  214 acatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtga 268  Q
    |||||||| || | ||||||||| |||||| || |||||||||||||||||||||    
T  31706674 acatacatcatatattgaatgaatctaaaatatgaatttttgcttatatttgtga 31706620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 2128515 - 2128434
Alignment:
Q  123 cttataacatacatcctacagtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtcta 203  Q
    ||||| ||||||| ||| ||||||  | ||||| ||||||||||| ||||| ||| ||||||||||| |||||||| |||||    
T  2128515 cttatgacatacaccctccagtcactattataagcaaaaattcatgttttagattcattcaataaatgatgtatgtggtcta 2128434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 5790749 - 5790681
Alignment:
Q  176 ttattcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaa 243  Q
    ||||||||| |||||||||||| ||  ||||||   |||||||||||||||  ||||||||||||||||    
T  5790749 ttattcaattaataatgtatgtggttcacaatatgtaccacatacattattaattgaatgaacctaaaa 5790681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 8439352 - 8439396
Alignment:
Q  229 tgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    ||||||||||||||| |||| |||||||||||||| |||| ||||    
T  8439352 tgaatgaacctaaaatataattttttgcttatattagtgaccgga 8439396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 12744999 - 12744915
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||| ||||| |||||||| ||||| |||||| |||| |||||| |||  ||||||||| ||||||  ||| ||||||||||||    
T  12744999 attcattaaatgatgtatgtggtctataataaagaccatatacatcattaattgaatgaatctaaaatgtaagtttttgcttata 12744915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 37897808 - 37897696
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||  | |||||||||| ||||| ||||| |||||||| ||||| |||||| | || |||||| |||  ||||||||| ||||||  ||     
T  37897808 tataagcaaaaatcaacattttaaattcattcattaaattatgtatgtggtctataataaagatcatatacatcattaattgaatgaatctaaaatttag 37897709  T
Q  249 atttttgcttata 261  Q
    |||||||||||||    
T  37897708 atttttgcttata 37897696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 42787690 - 42787761
Alignment:
Q  209 aaaccacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgtat 281  Q
    |||||||| |||| |||| |||||||||||||||| || |||||||| ||||| | |||| |||| |||||||    
T  42787690 aaaccaca-acatcatttattgaatgaacctaaaaaatgaatttttgtttataatagtgatcggaagatgtat 42787761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 15936209 - 15936334
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatta-ttcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    ||||||||||||| |||||||| |||||||| |||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||  ||||| ||| ||    
T  15936209 gtcataaatataagcaaaaatttatattttatattaattcaataaatgatgtatgttgtctacaataaagaccacatacatcatttactgaatcaactta 15936308  T
Q  241 aaacataaatttttgcttatatttgt 266  Q
    |||||| |||||||||||||||||||    
T  15936309 aaacatgaatttttgcttatatttgt 15936334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 29424117 - 29423990
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||| || ||||| || |||| ||||||||| |||    
T  29424117 gtcacaaatataagcaaaaattcatattttagattcattcaataaatgatgtatgttgtctgcaataaagactacatatataatttattgaatgaatcta 29424018  T
Q  241 aaacataaatttttgcttatatttgtga 268  Q
    ||| ||||||||||||||| ||||||||    
T  29424017 aaatataaatttttgcttacatttgtga 29423990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 8506351 - 8506219
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| ||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |  |||| ||||||||| ||     
T  8506351 gtcacaaatataaacaaaaatttatgttttagattcattcaataaataatgtatgttgtctacaataaagaccacatataacatttattgaatgaatct- 8506253  T
Q  241 aaacataaatttttgcttatatttgtgagcggat 274  Q
    |||||  ||||||||||||||||||||| |||||    
T  8506252 aaacacgaatttttgcttatatttgtgaccggat 8506219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 21435804 - 21435676
Alignment:
Q  143 gtcataaatataaacaaaaa-ttcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacct 239  Q
    ||||||||||||| |||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||| |||||||||  |    
T  21435804 gtcataaatataagcaaaaagttcatattttagattcattcaataaatgatgtatgttgtctacaataaagaccacatacataatttattgaatgaattt 21435705  T
Q  240 aaaacataaatttttgcttatatttgtga 268  Q
    |||||||  |||||| | |||||||||||    
T  21435704 aaaacattgatttttacatatatttgtga 21435676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 8506296 - 8506355
Alignment:
Q  214 acatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||    
T  8506296 acatacattatttattgaatgaatctaaaacataaatttttgtttatatttgtgaccgga 8506355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 7428906 - 7429012
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||||||||||||  || ||||||||||| ||||||||   ||||| || ||| ||||||||| |||| ||||||||| |||||| ||||    
T  7428906 tataagcaaaaattcatattttaggttcattcaataaatgatgtatgtgacctacattataaatcacatacatcatttattgaatgaatctaaaatataa 7429005  T
Q  249 atttttg 255  Q
    |||||||    
T  7429006 atttttg 7429012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 29423989 - 29424121
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaaccta 240  Q
    |||| |||| ||| |||||||| |||||||| ||| ||||||||||| || ||||| ||||  | |  | || |||||||| |||| ||||||||| |||    
T  29423989 gtcacaaatgtaagcaaaaatttatattttagattcattcaataaattatatatgtagtctttattgcagacaacatacatcatttattgaatgaatcta 29424088  T
Q  241 aaacataaatttttgcttatatttgtgagcgga 273  Q
    ||| || ||||||||||||||||||||| ||||    
T  29424089 aaatatgaatttttgcttatatttgtgaccgga 29424121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 291
Target Start/End: Original strand, 7258627 - 7258741
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatga 276  Q
    ||||| |||||||||||||| ||||| |||||| |||| || ||| |||  ||||||||| ||||||  |||| |||| |||||| | |||| |||| ||    
T  7258627 attcattaaataatgtatgtggtctataataaagaccatatgcatcattaattgaatgaatctaaaatgtaaaattttacttataatagtgaccggagga 7258726  T
Q  277 tgtatcttttttgtt 291  Q
    | |||||||||||||    
T  7258727 tatatcttttttgtt 7258741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 3687559 - 3687604
Alignment:
Q  151 tataaacaaaaattcatattttaaa-ttattcaataaataatgtat 195  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||    
T  3687559 tataaacaaaaattaatattttaaatttattcaataaataatgtat 3687604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 13841862 - 13841955
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaa 243  Q
    ||||| |||||||| |  ||||||||| ||||||||||| |||||| | |||||||   |||| |||||||| |||| ||||||||||||||||    
T  13841862 tataagcaaaaatttactttttaaattcattcaataaatgatgtatttagtctacatataaactacatacatcatttattgaatgaacctaaaa 13841955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 7428954 - 7428906
Alignment:
Q  213 cacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||| |||| |||||||||||||||| || ||||||||||||||    
T  7428954 cacatacatcatttattgaatgaacctaaaatatgaatttttgcttata 7428906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 3611867 - 3611781
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataa-aaccacatacattattttttgaatgaacctaaaacataaatttttgcttatattt 264  Q
    ||||||| ||| |||||||| ||||| ||||  |||||||||||| |||  |||||||||||||||| || || ||||||||||||||    
T  3611867 attcaattaatgatgtatgtggtctataatatgaaccacatacatcattaattgaatgaacctaaaaaatcaa-ttttgcttatattt 3611781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 10117012 - 10117115
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatga 276  Q
    ||||| ||||| |||||||| ||||| |||||| | || |||||| |||  ||||||||| ||||||  |||||||||||||||| | |||| ||||||     
T  10117012 attcattaaatgatgtatgtggtctataataaatatcatatacatcattaattgaatgaatctaaaatgtaaatttttgcttataatagtgaccggatgg 10117111  T
Q  277 tgta 280  Q
    ||||    
T  10117112 tgta 10117115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 38884044 - 38883958
Alignment:
Q  178 attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaacataaatttttgcttatattt 264  Q
    ||||||| ||| |||||||||||| | | || ||||||||||||| |||  |||||||||||||||| |||||  |||||||||||||    
T  38884044 attcaattaatgatgtatgttgtccatattataaaccacatacatcattaattgaatgaacctaaaaaataaa-atttgcttatattt 38883958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 7223944 - 7223898
Alignment:
Q  143 gtcataaatataaacaaaaattcatattttaaatt-attcaataaat 188  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||    
T  7223944 gtcacaaatataagcaaaaattcatattttaaattcattcaataaat 7223898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 19293114 - 19293048
Alignment:
Q  178 attcaataaataatgtatgttgtctacaata-aaaccacatacattattttttgaatgaacctaaaa 243  Q
    ||||||| ||| |||||||| ||||| |||| ||||||||||||| |||  ||||||||||||||||    
T  19293114 attcaatcaatgatgtatgtggtctataatataaaccacatacatcattgattgaatgaacctaaaa 19293048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 24053661 - 24053599
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcgga 273  Q
    ||||||||||| |||   ||||||||||||||| |||| |||||||||||||| |||| ||||    
T  24053661 accacatacatcattaaatgaatgaacctaaaatataattttttgcttatattagtgaccgga 24053599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 45045417 - 45045503
Alignment:
Q  176 ttattcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||||| ||||| || ||||| |||||| |||| |||||| |||  ||||||||| |||||| ||| ||||||| |||||    
T  45045417 ttattcaataaattatgtacgtagtctataataaagaccatatacatcattaattgaatgaatctaaaatatagatttttgtttata 45045503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 24419006 - 24418913
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaa 243  Q
    ||||| ||||||||||  ||||| ||| ||||||||||| |||||||| ||||| |   | ||||||||||| |||| |||||||||| |||||    
T  24419006 tataagcaaaaattcactttttagattcattcaataaatgatgtatgtcgtctatatatagaccacatacatcatttattgaatgaacttaaaa 24418913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 26489669 - 26489617
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttatattt 264  Q
    |||||||||||||||  || ||||||||||||| ||||| ||||||||||||||    
T  26489669 accacatacattattaattcaatgaacctaaaaaataaa-ttttgcttatattt 26489617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 33934121 - 33934185
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaaaccacatacattattttttgaatgaacctaaaa 243  Q
    ||||||| ||| |||||||| ||||| |||||| |||||||||| |||  ||||||||||||||||    
T  33934121 attcaatcaatgatgtatgtggtctataataaa-ccacatacatcattgattgaatgaacctaaaa 33934185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 41387838 - 41387907
Alignment:
Q  211 accacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtgagcggatgatgta 280  Q
    ||||||||||||||||  |||||||| |||||| |||  |||||||||||| | |||| |||||| ||||    
T  41387838 accacatacattatttaatgaatgaatctaaaatatagttttttgcttataatagtgaccggatggtgta 41387907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 1897872 - 1897932
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa 210  Q
    ||||| |||||||  |||||||| ||| ||||| |||||||||||||||||||| ||||||    
T  1897872 tataagcaaaaatcaatattttatatttattcattaaataatgtatgttgtctataataaa 1897932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 5888378 - 5888462
Alignment:
Q  178 attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||| ||||| |||||||||||||| |||||| |||| |||||| |||  ||||||||| ||| ||  || |||||||||||||    
T  5888378 attcattaaatgatgtatgttgtctataataaagaccatatacatcattaattgaatgaatctacaaagtagatttttgcttata 5888462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 24820364 - 24820312
Alignment:
Q  209 aaaccacatacattattttttgaatgaacctaaaacataaatttttgcttata 261  Q
    ||||||||||||| |||| |||||||||||||| |  | ||||||||||||||    
T  24820364 aaaccacatacatcatttattgaatgaacctaagaagtgaatttttgcttata 24820312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 273
Target Start/End: Original strand, 99982 - 100109
Alignment:
Q  148 aaatataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaaca 245  Q
    ||||||||  ||||||| |||||||| ||| ||||||||||| |||  |||||||||||||||| | ||||||||| |||| |||||||||  |||||||    
T  99982 aaatataagtaaaaattaatattttagatttattcaataaattatggttgttgtctacaataaatatcacatacatcatttattgaatgaatttaaaaca 100081  T
Q  246 taaatttttgcttatatttgtgagcgga 273  Q
    | ||||  ||||||||||| ||| ||||    
T  100082 tgaattaatgcttatatttatgaccgga 100109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 24732 - 24618
Alignment:
Q  151 tataaacaaaaattcatattttaaatt-attcaataaataatgtatgttgtctacaataaa-accacatacattattttttgaatgaacctaaaacataa 248  Q
    ||||| |||||||| |||||||| ||| ||||| ||||| |||||||| ||||| |||||| |  | |||| |||||  ||||||||| |||||| ||||    
T  24732 tataagcaaaaattaatattttagattcattcattaaatgatgtatgtggtctataataaagataatatacgttattaattgaatgaatctaaaatataa 24633  T
Q  249 atttttgcttatatt 263  Q
      |||||||||||||    
T  24632 tgttttgcttatatt 24618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 17314 - 17364
Alignment:
Q  214 acatacattattttttgaatgaacctaaaacataaatttttgcttatatttgt 266  Q
    |||||||| |||| ||||||||| ||||||||||  |||||||||||||||||    
T  17314 acatacatcatttattgaatgaatctaaaacata--tttttgcttatatttgt 17364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 246862 - 246802
Alignment:
Q  208 aaaaccacatacattattttttgaatgaacctaaaacataaatttttgcttatatttgtga 268  Q
    |||||||||||||| |||  ||||||| | ||||||  |||||||||||||||||| ||||    
T  246862 aaaaccacatacatcattaattgaatgtatctaaaaagtaaatttttgcttatattagtga 246802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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