View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503-Insertion-7 (Length: 411)

Name: NF1503-Insertion-7
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503-Insertion-7
NF1503-Insertion-7
[»] chr2 (20 HSPs)
chr2 (7-411)||(44615331-44615740)
chr2 (26-291)||(44624723-44624988)
chr2 (41-391)||(39153018-39153356)
chr2 (82-382)||(39216657-39216945)
chr2 (50-270)||(39138614-39138828)
chr2 (77-279)||(39205730-39205929)
chr2 (74-267)||(39196510-39196700)
chr2 (80-265)||(39371115-39371297)
chr2 (81-267)||(39387494-39387677)
chr2 (81-365)||(39396563-39396835)
chr2 (41-265)||(39380496-39380717)
chr2 (74-193)||(39421257-39421373)
chr2 (161-270)||(39472761-39472870)
chr2 (74-241)||(44895133-44895297)
chr2 (137-348)||(39412957-39413159)
chr2 (22-70)||(44749731-44749779)
chr2 (86-267)||(39223715-39223893)
chr2 (360-403)||(44749560-44749603)
chr2 (79-150)||(39099584-39099652)
chr2 (164-217)||(39188804-39188857)
[»] chr5 (2 HSPs)
chr5 (23-291)||(17060587-17060852)
chr5 (74-267)||(33562281-33562471)
[»] chr8 (4 HSPs)
chr8 (124-381)||(44730154-44730402)
chr8 (125-381)||(44949787-44950037)
chr8 (74-270)||(45342957-45343150)
chr8 (24-94)||(44950036-44950106)
[»] scaffold0283 (1 HSPs)
scaffold0283 (125-381)||(5767-6017)
[»] chr7 (1 HSPs)
chr7 (79-270)||(19808900-19809085)
[»] chr6 (1 HSPs)
chr6 (41-195)||(16114326-16114477)


Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 44615331 - 44615740
Alignment:
Q  7 aatactaaaccctacgattccactgcctaggaaaggagacaaagctgtgattattgatgaaggctggatctatctgctagaacaactgatgataatctca 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615331 aatactaaaccctacgattccactgcctaagaaaggagacaaagcggtgattattgatgaaggctggatctatctgctagaacaactgatgataatctca 44615430  T
Q  107 ccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615431 ccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctc 44615530  T
Q  207 ttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaata 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44615531 ttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttatgttgcgtctgctgctgaata 44615630  T
Q  307 caagatagctgtgaagctgtgtaggaccctgggttttgcaaataaagtctctcgtatgttgatttagaaattctttag-----tcggtcaccaatatttc 401  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||    
T  44615631 caagatagctgtgaagctgtgtaggacactgggttttgcaaataaagtctctggtatgttgatttagaaattctttagtcggttcggtcaccaatatttc 44615730  T
Q  402 tcttattgtc 411  Q
    ||||||||||    
T  44615731 tcttattgtc 44615740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 44624723 - 44624988
Alignment:
Q  26 ccactgcctaggaaaggagacaaagctgtgattattgatgaag---gctggatctatctgctagaacaactgatgataatctcaccaaatattattaaat 122  Q
    ||||| |||| |||||||||||||||||||||||||||||| |   || | ||||||||||||||| ||||||||| |||||||||||||||||   ||     
T  44624723 ccacttcctaagaaaggagacaaagctgtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatatta---aac 44624819  T
Q  123 cttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgat 222  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||    
T  44624820 cttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgat 44624919  T
Q  223 tttatcgatttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgc 291  Q
    ||| |||||||| ||||||  || ||| |||||||||||||||||||  ||| ||||||  ||||||||    
T  44624920 tttgtcgatttatggattgcatacttattttgatgaagatgaagtctaaaagctttttggatctgttgc 44624988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 41 - 391
Target Start/End: Original strand, 39153018 - 39153356
Alignment:
Q  41 ggagacaaagctgtgattattgatgaaggctggatctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaag 140  Q
    |||||| | ||||||||||| ||||   |||| |||| |||||||||||||||||||| ||||||||| || ||||   || ||||||||||||| ||||    
T  39153018 ggagaccatgctgtgattatagatggtagctgcatctttctgctagaacaactgatgagaatctcaccgaagatta---aaccttgtgtaagagaagaag 39153114  T
Q  141 cgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggatt 240  Q
    | ||||| || ||   ||| ||||||||||| || ||||||||||| ||||||||||||| || |||||| |||||| || |||| |||||||| |||||    
T  39153115 cattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatggatt 39153214  T
Q  241 ggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtaggaccctgggt 340  Q
    ||||| ||  || ||| |||||||||||||  || ||||||| | |||         |||| || ||||||  |||||| | || | | |||||||||||    
T  39153215 ggttacttctttcgataaagatgaagtcttggagctttttgcatttgt---------tgctcaacacaagactgctgtggaactatttcggaccctgggt 39153305  T
Q  341 tttgcaaataaagtctctcgtatgttgatttagaaattctttagtcggtca 391  Q
    |||||||||||||| ||| ||||||| ||||||| || |||| ||| ||||    
T  39153306 tttgcaaataaagtttctggtatgttaatttagacatgctttggtcagtca 39153356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 382
Target Start/End: Original strand, 39216657 - 39216945
Alignment:
Q  82 gctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaa 181  Q
    ||||||||||||||||| |||||||||   |  ||||||| ||||||||||||| ||||| ||||||||||| | ||| |||||| |||||||||  |||    
T  39216657 gctagaacaactgatgaaaatctcacc---tcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaa 39216753  T
Q  182 aataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagtcttcaagatttttg 281  Q
    |||||  |||||||||||| || ||| || |||||  || |||| || ||||| |||||||||| ||  |||| |||||||||||| ||  || ||||||    
T  39216754 aatactaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatggattggttacttcttttggtgaagatgaagttttggagctttttg 39216853  T
Q  282 cttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtaggaccctgggttttgcaaataaagtctctcgtatgttgatttagaaattctt 381  Q
    | |||||||| || ||        ||||||||||| |  | |||| |  |||||||||||||||||||||||| ||| ||||||| |||||||||| |||    
T  39216854 catctgttgc-tcagc--------acaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttagaaatgctt 39216944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 270
Target Start/End: Original strand, 39138614 - 39138828
Alignment:
Q  50 gctgtgattattgatgaaggctggatctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagc 149  Q
    ||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||||||| ||    |||||| ||  ||||||||| ||||| |||||||    
T  39138614 gctgtgattattgatgatggctgcatctttctgctagaacaactgatgagaatctcaccgaa---gattaaacctgatgtaagagaagaagcattgaagc 39138710  T
Q  150 tagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaatta 249  Q
    ||||   | |  |||||||||||||||   ||||||| ||||||||| ||| || ||| || |||||| ||||||| ||  |||| | |||| ||| |||    
T  39138711 tagcacttaatctgaaagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttactta 39138807  T
Q  250 ctttgatgaagatgaagtctt 270  Q
     ||||||||||||||||||||    
T  39138808 ttttgatgaagatgaagtctt 39138828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 279
Target Start/End: Complemental strand, 39205929 - 39205730
Alignment:
Q  77 tatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatga 176  Q
    |||||||| ||||||||||||| ||||||||||    ||||| || ||||||| |||||  |||| ||||||||||| | ||| ||||||||||| ||||    
T  39205929 tatctgcttgaacaactgatgagaatctcaccag---ttattgaaccttgtgtgagagaaaaagcattgaagctagcatttgacttgaaagctaagatga 39205833  T
Q  177 aagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagtcttcaagat 276  Q
    |||||||||| ||||||||| ||| || |||||| |||||| || |||| ||||||||   |||| || |||  |||||| |||||||||| ||| ||||    
T  39205832 aagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataaattgcttgattcttttgataaagatgaagttttcgagat 39205733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 74 - 267
Target Start/End: Complemental strand, 39196700 - 39196510
Alignment:
Q  74 atctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaaca 173  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||   || ||||||| ||| | ||||| ||||||||||| | ||| |||||||||||||    
T  39196700 atctatctgctggaacaactgatgagaatctcaccagatatta---aaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaaca 39196604  T
Q  174 tgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagt 267  Q
    |||| || ||||| ||||||||||||| || |||||| |||||  || |||| || |||||   |||| || |||  |||||||||||||||||    
T  39196603 tgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagt 39196510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 80 - 265
Target Start/End: Original strand, 39371115 - 39371297
Alignment:
Q  80 ctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaag 179  Q
    |||||||||||||| |||| ||||||||||||||||    |  ||||||||||||||||||| |||||||||||   |||  ||||||| ||||||||||    
T  39371115 ctgctagaacaacttatgaaaatctcaccaaatattg---agccttgtgtaagagatgaagcattgaagctagcacttgatatgaaagccaacatgaaag 39371211  T
Q  180 aaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaa 265  Q
    ||||||   ||||| |||||| || |||||| ||||||||| |||| || | ||| |||||||||| ||  |||||||||||||||    
T  39371212 aaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaattatggattggttacttcttttgatgaagatgaa 39371297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 267
Target Start/End: Complemental strand, 39387677 - 39387494
Alignment:
Q  81 tgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaaga 180  Q
    |||||||||||||||||| || ||||||||| |||    || ||||||||| | | ||||| |||||||||||| |||| || |||||||||||||||||    
T  39387677 tgctagaacaactgatgagaacctcaccaaaaattg---aaacttgtgtaaaaaaagaagcattgaagctagcgcgtgatttaaaagctaacatgaaaga 39387581  T
Q  181 aaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagt 267  Q
    |||||| |||||||||||||  | |||||| |||||  || |||| || ||||| ||  || || |||| ||||| |||||||||||    
T  39387580 aaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatgggctgcttgattattttgacgaagatgaagt 39387494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 365
Target Start/End: Complemental strand, 39396835 - 39396563
Alignment:
Q  81 tgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaaga 180  Q
    |||||||| ||||||||| ||||||||||| |||||    | ||||||||||||| |||||  ||||||||||   ||| |||| |||| |||| | |||    
T  39396835 tgctagaagaactgatgagaatctcaccaactattag---accttgtgtaagagaagaagcactgaagctagcacatgatttgagagcttacattagaga 39396739  T
Q  181 aaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagtcttcaagattttt 280  Q
    |||||| ||||||||||||| || |||||| ||| | ||| |||| || ||||| |||||| ||| ||  || |||||||||||||| ||  || |||||    
T  39396738 aaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaatttatggattgcttacttctttcgatgaagatgaagttttggagcttttt 39396639  T
Q  281 gcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtaggaccctgggttttgcaaataaagtctctcgtatgt 365  Q
    || || ||||| || ||        |||||| |||| || |||||| |  |||||||||||||||||||||||| ||| ||||||    
T  39396638 gcatcggttgc-tcagc--------acaagacagctatggagctgtttgagaccctgggttttgcaaataaagtttctggtatgt 39396563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 265
Target Start/End: Complemental strand, 39380717 - 39380496
Alignment:
Q  41 ggagacaaagctgtgattattgatgaaggctggatctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaag 140  Q
    |||||||| ||||||||| || ||||  || | |||| |||||||||||||||||||| | ||||||| ||||||    ||  |||||||||||| ||||    
T  39380717 ggagacaatgctgtgattttttatgatagccgcatctttctgctagaacaactgatgagagtctcaccgaatattg---aagattgtgtaagagaagaag 39380621  T
Q  141 cgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggatt 240  Q
    |  ||| ||||||   ||| ||||||||| |||| | ||| ||||| ||| ||||| ||| || ||||||||||||| || |||| || ||||| |||||    
T  39380620 cactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaatttatggatt 39380521  T
Q  241 ggttaattactttgatgaagatgaa 265  Q
    | ||| ||  || ||||||||||||    
T  39380520 gcttacttctttcgatgaagatgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 39421373 - 39421257
Alignment:
Q  74 atctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaaca 173  Q
    |||| |||||||||||||||||||| |||||||||| ||||||   || ||||||||| ||| ||||| |||||||| ||   ||| ||||||||||| |    
T  39421373 atctttctgctagaacaactgatgaaaatctcaccacatatta---aaacttgtgtaaaagaagaagcattgaagctcgctcttgatttgaaagctaata 39421277  T
Q  174 tgaaagaaaataccgaaaat 193  Q
    || |||||||||| ||||||    
T  39421276 tggaagaaaatactgaaaat 39421257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 39472870 - 39472761
Alignment:
Q  161 ttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaag 260  Q
    ||||||| |||||||||||||||||| |||||||||||||  | |||||| |||||| || |||| || ||||| | |||| ||| ||  ||||||||||    
T  39472870 ttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaag 39472771  T
Q  261 atgaagtctt 270  Q
    ||||||||||    
T  39472770 atgaagtctt 39472761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 44895297 - 44895133
Alignment:
Q  74 atctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaaca 173  Q
    |||||||||||||||  |||||||  ||| |||||||   |||||||| || ||||||||||  |||| |||||||||||   | | || ||||||||||    
T  44895297 atctatctgctagaaacactgatgggaatgtcaccaa---ttattaaacctcgtgtaagagaacaagcattgaagctagcacataaattcaaagctaaca 44895201  T
Q  174 tgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattg 241  Q
    | |||| |||||| ||||||||||||| || |||||| |||||| || |||| || ||||| ||||||    
T  44895200 taaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatggattg 44895133  T

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Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 348
Target Start/End: Complemental strand, 39413159 - 39412957
Alignment:
Q  137 gaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacg 236  Q
    ||||| |||||||||||   ||| |||||||||||| ||||||||||||||||||| ||||||| || |||| | ||||| ||| |||| ||  |||  |    
T  39413159 gaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttgtg 39413060  T
Q  237 gattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtaggaccct 336  Q
    ||||||||| ||  || |||||||||||| ||||  || ||||||| | |||         |||| || |||||||||||| |||||||| | | |||||    
T  39413059 gattggttacttttttggatgaagatgaaatcttggagctttttgcatttgt---------tgctcaacacaagatagctgcgaagctgtttggaaccct 39412969  T
Q  337 gggttttgcaaa 348  Q
    ||||||||||||    
T  39412968 gggttttgcaaa 39412957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 44749731 - 44749779
Alignment:
Q  22 gattccactgcctaggaaaggagacaaagctgtgattattgatgaaggc 70  Q
    |||||||||||||| ||| || |||||||||||||||||||||||||||    
T  44749731 gattccactgcctaagaagggtgacaaagctgtgattattgatgaaggc 44749779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 267
Target Start/End: Original strand, 39223715 - 39223893
Alignment:
Q  86 gaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaata 185  Q
    ||||||||||||| |||||||||| |||||    || ||||||  |||||  |||| ||||||||||| | ||| || ||||  ||||||||||| ||||    
T  39223715 gaacaactgatgagaatctcaccagatattg---aaccttgtgagagagaaaaagcattgaagctagcatatgatttaaaagaaaacatgaaagacaata 39223811  T
Q  186 ccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagt 267  Q
    | ||||| ||||||| || |||||| |||||  || |||| || |||||   |||| || |||  |||||||||||||||||    
T  39223812 ctgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataaattgcttgattcatttgatgaagatgaagt 39223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 403
Target Start/End: Complemental strand, 44749603 - 44749560
Alignment:
Q  360 gtatgttgatttagaaattctttagtcggtcaccaatatttctc 403  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||    
T  44749603 gtatgttgatttagaaattctttagtcagtcaccagtatctctc 44749560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 39099584 - 39099652
Alignment:
Q  79 tctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagct 150  Q
    |||||| ||||||||||||| |||||||||| |   ||| ||| ||||||||||||| |||||| |||||||    
T  39099584 tctgctcgaacaactgatgagaatctcaccaca---tatcaaaccttgtgtaagagaagaagcgatgaagct 39099652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 39188857 - 39188804
Alignment:
Q  164 aaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttcta 217  Q
    ||||||||||||||||||||||  | ||||||||||| || |||||| ||||||    
T  39188857 aaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttcta 39188804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 23 - 291
Target Start/End: Original strand, 17060587 - 17060852
Alignment:
Q  23 attccactgcctaggaaaggagacaaagctgtgattattgatgaaggctggatctatctgctagaacaactgatgataatctcaccaaatattattaaat 122  Q
    |||||||| |||| ||| |||||||||| |||||||||||||||| || | |||| | |||||||||||||||||||||| ||||||||||||   ||||    
T  17060587 attccactacctaagaagggagacaaagttgtgattattgatgaaagccgcatctttatgctagaacaactgatgataatgtcaccaaatatt---aaat 17060683  T
Q  123 cttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgat 222  Q
    ||||||||| ||| ||||| |||||||||||   |||||||||||||||||| |||| |||||| ||| |||| ||||||| ||| |||||||| |||||    
T  17060684 cttgtgtaaaagacgaagctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgat 17060783  T
Q  223 tttatcgatttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgc 291  Q
     || ||| |||| |||||| ||| ||| |||||| |||||||||||||  |  ||||||| ||||||||    
T  17060784 cttgtcggtttatggattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgc 17060852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 267
Target Start/End: Original strand, 33562281 - 33562471
Alignment:
Q  74 atctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaaca 173  Q
    |||||||| || ||||||||||||| |||||||||| |||||    || ||||||| ||| | ||||| ||||||||||| | ||| |||||||||||||    
T  33562281 atctatcttctggaacaactgatgagaatctcaccagatattg---aaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaaca 33562377  T
Q  174 tgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagt 267  Q
    ||||||||||||| |||  || ||||| || |||||| |||||  || |||| || |||||   |||| || |||  |||||||||||||||||    
T  33562378 tgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagt 33562471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 124 - 381
Target Start/End: Original strand, 44730154 - 44730402
Alignment:
Q  124 ttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgatt 223  Q
    |||||||||||||||||| |||||||||||   |||||||||||||||||| ||||||||||| |||||||||| ||||| ||| |||||||||||||||    
T  44730154 ttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgatt 44730253  T
Q  224 ttatcgatttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagc 323  Q
    ||  |||||||  ||||| ||| ||||||||||| |||||||||||   || |||  || |||||         || |||| |||||||||||| |||      
T  44730254 ttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgt---------tgttgaacacaagatagctgcgaatg 44730344  T
Q  324 tgtgtaggaccctgggttttgcaaataaagtctctcgtatgttgatttagaaattctt 381  Q
    ||| ||||||||||  |||||  |||||||||||||||| ||||||| ||||||||||    
T  44730345 tgtttaggaccctgcattttgtgaataaagtctctcgtaagttgattaagaaattctt 44730402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 125 - 381
Target Start/End: Complemental strand, 44950037 - 44949787
Alignment:
Q  125 tgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattt 224  Q
    ||||| ||||||||||| |||||||||||   ||||||||||  ||| || |||||||||||  ||||||||||||||| |||  ||||||||||||||     
T  44950037 tgtgttagagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgatta 44949938  T
Q  225 tatcgatttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagct 324  Q
    || ||||||| |||||| ||| ||||||||||  |||||| ||||  ||| ||| ||| |||||         ||||||| |||| |||||||||||| |    
T  44949937 taacgatttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgt---------tgctgaacacaatatagctgtgaaggt 44949847  T
Q  325 gtgtaggaccctgggttttgcaaataaagtctctcgta---tgttgatttagaaattctt 381  Q
    || ||||||||||| ||||| ||||| |||||||||||   |||||||| ||||||||||    
T  44949846 gtttaggaccctggattttgtaaatatagtctctcgtaagttgttgattcagaaattctt 44949787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 270
Target Start/End: Original strand, 45342957 - 45343150
Alignment:
Q  74 atctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaaca 173  Q
    |||||||| |||||||||||||||| |||||  |||   | ||||||| ||||||||||||| ||||| || ||||||||   ||||||||||||||||     
T  45342957 atctatctcctagaacaactgatgagaatcttgcca---agtattaaaccttgtgtaagagaagaagcattcaagctagcacttgagttgaaagctaacg 45343053  T
Q  174 tgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagtctt 270  Q
    |||||| |||||| ||||| || ||| | | |||||| |||||| ||||||| || ||| | | |||| ||| ||  |||||| |||||||||||||    
T  45343054 tgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaattcatgtattgcttacttcttttgataaagatgaagtctt 45343150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 44950106 - 44950036
Alignment:
Q  24 ttccactgcctaggaaaggagacaaagctgtgattattgatgaaggctggatctatctgctagaacaactg 94  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||| || |  ||||||| ||||||||||||    
T  44950106 ttccattgcctaagaagggagacaaagctgtgattattgatgaaagccgcgtctatcttctagaacaactg 44950036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 125 - 381
Target Start/End: Complemental strand, 6017 - 5767
Alignment:
Q  125 tgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattt 224  Q
    ||||| ||||||||||| |||||||||||   ||||||||||  ||| || |||||||||||  ||||||||||||||| |||  ||||||||||||||     
T  6017 tgtgttagagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgatta 5918  T
Q  225 tatcgatttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagct 324  Q
    || ||||||| |||||| ||| ||||||||||  |||||| ||||  ||| ||| ||| |||||         ||||||| |||| |||||||||||| |    
T  5917 taacgatttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgt---------tgctgaacacaatatagctgtgaaggt 5827  T
Q  325 gtgtaggaccctgggttttgcaaataaagtctctcgta---tgttgatttagaaattctt 381  Q
    || ||||||||||| ||||| ||||| |||||||||||   |||||||| ||||||||||    
T  5826 gtttaggaccctggattttgtaaatatagtctctcgtaagttgttgattcagaaattctt 5767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 270
Target Start/End: Original strand, 19808900 - 19809085
Alignment:
Q  79 tctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaa 178  Q
    |||||||||||||||||||| ||||||||| || ||||   || || |||||||||| ||| | |||||||||||   ||| ||||||||||||||||      
T  19808900 tctgctagaacaactgatgagaatctcaccgaagatta---aacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga-- 19808994  T
Q  179 gaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagatgaagtctt 270  Q
     ||| ||| ||||||||| ||| || |||||| |||||| || |||| ||  |||| | |||| ||| ||| ||||||||||||||||||||    
T  19808995 -aaagtactgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaattgcttacttattttgatgaagatgaagtctt 19809085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 16114326 - 16114477
Alignment:
Q  41 ggagacaaagctgtgattattgatgaaggctggatctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaag 140  Q
    |||||||| |||||||||||||||||| ||   ||||||||| ||||| ||||||||| ||| ||||||   | ||||||| || ||||||||||  |||    
T  16114326 ggagacaatgctgtgattattgatgaatgccacatctatctgttagaagaactgatgagaatatcacca---actattaaacctcgtgtaagagaaaaag 16114422  T
Q  141 cgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattc 195  Q
    | |||||||||||| | || ||||||||| |||||| ||| |||||  |||||||    
T  16114423 cattgaagctagcgcgcgatttgaaagcttacatgagagagaatactaaaaattc 16114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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