View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503-Insertion-8 (Length: 399)
Name: NF1503-Insertion-8
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503-Insertion-8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 146 - 399
Target Start/End: Complemental strand, 40123702 - 40123449
Alignment:
| Q |
146 |
ctttaatctatttttcttcactttaatcagcccttgatattattttgagaaatttgaagtgtttatgcatgcttatttcgggtaaaaagccaagcaccaa |
245 |
Q |
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| T |
40123702 |
ctttaatctatttttcttcactttaatcagcccttgatattattttgagaaatttgaagtgtttatgcatgcttatttcgggtaaaaagccaagcaccaa |
40123603 |
T |
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| Q |
246 |
tgaagatattactaaatatccgttcctaaagatgagacatagaaccaggtaattcaatagtgatttgaacaaccaccattcctaaatatggctgagtatc |
345 |
Q |
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| T |
40123602 |
tgaagatattactaaatatccgttcctaaagatgagacatagaaccaggtaattcaatagtgatttgaacaaccaccgttcctaaatatggctgagtatc |
40123503 |
T |
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| Q |
346 |
caacaataattaactaccattcataggagaacggtagttaaccaccttgaagat |
399 |
Q |
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| T |
40123502 |
caacaataattaactaccattcataggagaacggtagttaaccacgttgaagat |
40123449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 4195436 - 4195558
Alignment:
| Q |
37 |
ttcatcatgttcttattgtcaaagtaatcaactgatccatgaaatgttattttagggatacattttgatta--ttgatttgttttattatagaatgcatc |
134 |
Q |
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||||||||||||||||| ||||||||||| ||||||| || |||| |||| ||| ||| |||| ||| |||||||| | |||| ||||||| ||| |
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| T |
4195436 |
ttcatcatgttcttattctcaaagtaatctgctgatcctggatatgtgatttcaggctcacaatttgtttattttgatttgctgtattgtagaatgtatc |
4195535 |
T |
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| Q |
135 |
atttttcctccctttaatctatt |
157 |
Q |
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| T |
4195536 |
atttttcttccctttaatatatt |
4195558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 4195586 - 4195660
Alignment:
| Q |
175 |
gcccttgatattattttgagaaatttgaagtgttta---tgcatgcttatttcgggtaaaaagccaagcaccaatga |
248 |
Q |
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|||||||||| |||||||||||||||||||||||| || |||||||||| |||| |||||||||||| ||||| |
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| T |
4195586 |
gcccttgata--attttgagaaatttgaagtgtttattctggatgcttattttcggtagaaagccaagcactaatga |
4195660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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