View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503-Insertion-9 (Length: 371)

Name: NF1503-Insertion-9
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503-Insertion-9
NF1503-Insertion-9
[»] chr8 (2 HSPs)
chr8 (8-371)||(35907760-35908123)
chr8 (131-345)||(35915371-35915598)
[»] chr4 (2 HSPs)
chr4 (8-371)||(33911153-33911516)
chr4 (102-287)||(46537834-46538014)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 371
Target Start/End: Complemental strand, 35908123 - 35907760
Alignment:
Q  8 gtttagtccctatagtattgttcaaaatacacaatgtcaacattgtaagcattattgcagaactcaaatgcacacataaataaataaatattattctaag 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35908123 gtttagtccctatagcattgttcaaaatacacaatgtcaacattgtaagcattattgcagaactcaaatgcacacataaataaataaatattattctaag 35908024  T
Q  108 aactagtaatgaacagacattaacaaaagaaaaagttacctgtttcctttaatcttgaaccatgcctcagcgcaatggctgtgtgcgattcctagctcat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35908023 aactagtaatgaacagacattaacaaaagaaaaagttacctgtttcctttaatcttgaaccatgcctcagcgcaatggctgtgtgcgattcctagctcat 35907924  T
Q  208 ctttacatgcacaaccaagcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttctaacggttgcccagaggccagatg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35907923 ctttacatgcacaaccaagcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttctaacggttgcccagaggccagatg 35907824  T
Q  308 gcaaatcctacaaatcatttcgtcatccaaattttcaccaaaaccttcacatgtgccacagttc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35907823 gcaaatcctacaaatcatttcgtcatccaaattttcaccaaaaccttcacatgtgccacagttc 35907760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 131 - 345
Target Start/End: Complemental strand, 35915598 - 35915371
Alignment:
Q  131 caaaagaaaaagttacctgtttcctttaatcttgaaccatgcctcagcgcaatggctgtgtgcgattcctagctcatctttacatgcaca---accaagc 227  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||  |||| |||||||| |||||||||||||||||   |||||||    
T  35915598 caaaagaaaaagttatttgtttcctttaatcttgaaccatgcctcagcgcaatgacttcgtgcaattcctagttcatctttacatgcacaaccaccaagc 35915499  T
Q  228 ataatcaaacctgtacttttatcagcaatatttggagtgccaacagcag---------ttgcttctaacggttgcccagaggccagatggcaaatc-cta 317  Q
    ||||||||| ||||| |||||| |||| | | |||||||||||||||||         ||||||||||||||||| ||||| |||||||  ||||| |||    
T  35915498 ataatcaaatctgtatttttattagcactgtgtggagtgccaacagcagttgcttgacttgcttctaacggttgctcagagtccagatgagaaatctcta 35915399  T
Q  318 caaatcatttcgtcatccaaattttcac 345  Q
    ||||||||||| ||||||||||||||||    
T  35915398 caaatcatttcatcatccaaattttcac 35915371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 371
Target Start/End: Complemental strand, 33911516 - 33911153
Alignment:
Q  8 gtttagtccctatagtattgttcaaaatacacaatgtcaacattgtaagcattattgcagaactcaaatgcacacataaataaataaatattattctaag 107  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33911516 gtttagtccctatagcattgttcaaaatacacaatgtcaacattgtaagcattattgcagaactcaaatgcacacataaataaataaacattattctaag 33911417  T
Q  108 aactagtaatgaacagacattaacaaaagaaaaagttacctgtttcctttaatcttgaaccatgcctcagcgcaatggctgtgtgcgattcctagctcat 207  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33911416 aattagtaatgaacagacattaacaaaagaaaaagttacctgtttcctttaatcttgaaccatgcctcagcgcaatggctgtgtgcgattcctagctcat 33911317  T
Q  208 ctttacatgcacaaccaagcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttctaacggttgcccagaggccagatg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33911316 ctttacatgcacaaccaagcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttctaacggttgcccagaggccagatg 33911217  T
Q  308 gcaaatcctacaaatcatttcgtcatccaaattttcaccaaaaccttcacatgtgccacagttc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33911216 gcaaatcctacaaatcatttcgtcatccaaattttcaccaaaaccttcacatgtgccacagttc 33911153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 46537834 - 46538014
Alignment:
Q  102 tctaagaactagtaatgaacagacattaacaaaagaaaaagttacctgtttccttt-aatcttgaaccatgcctcagcgcaatggctgtgtgcgattcct 200  Q
    |||| |||||||||||||||| ||||||||||||       |||| |||||||||| ||||| ||| |||||||||||||||||||||||||| || |||    
T  46537834 tctacgaactagtaatgaacaaacattaacaaaaa------ttacgtgtttccttttaatctagaaacatgcctcagcgcaatggctgtgtgcaatgcct 46537927  T
Q  201 agctcatctttacatgcacaaccaagcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttctaac 287  Q
    ||||||||||||||||||||||||||||||||||||| | |||  |||| |||| |||||||| ||||||||||| |||||||||||    
T  46537928 agctcatctttacatgcacaaccaagcataatcaaacatttaccattattagcactatttggattgccaacagcatttgcttctaac 46538014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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