View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_high_11 (Length: 404)
Name: NF1503_high_11
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1503_high_11 |
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[»] scaffold0508 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 54 - 394
Target Start/End: Original strand, 24352580 - 24352920
Alignment:
Q |
54 |
tgattataacgaacctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg |
153 |
Q |
|
|
||||||||| |||||||||||||| ||||||| |||||| |||||||||| | | ||||||||| ||||||||| ||||||||||||||||||| | | |
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|
T |
24352580 |
tgattataatgaacctgttccactaaaccctaattttcctcttccggaatttgaatttgatcttgaaattaaagcttcatgtagagggtttatatatgtt |
24352679 |
T |
|
Q |
154 |
caaattcgttcaaaagcttatatatggaatccatccaccggattttatagaaaaatacctttccctcctagtgtttcacatttagttttttatggttttg |
253 |
Q |
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|| | | ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||| ||||||||||||||| |
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|
T |
24352680 |
cacacttgttcagaagcttatatatggaatccatccaccggatttcttagacaaatacctttccctcctaatgtttcaaatttaattttttatggttttg |
24352779 |
T |
|
Q |
254 |
ggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgtgag |
353 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
24352780 |
ggtatgacgaatcaacatatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgtgag |
24352879 |
T |
|
Q |
354 |
ccctacccatttgcctttttgtagtaagtcctcttcctttg |
394 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |||||| |
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|
T |
24352880 |
ccctacccatttgcctttttgtagtaagtcctctccctttg |
24352920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 51 - 394
Target Start/End: Original strand, 24340212 - 24340555
Alignment:
Q |
51 |
cgatgattataacgaacctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataatt |
150 |
Q |
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|
|||||||||||| |||||||||||||| ||||||| |||||| |||||||||| | | ||||||||| ||||||||| ||||||||||||||||||| | |
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|
T |
24340212 |
cgatgattataatgaacctgttccactaaaccctaattttcctcttccggaatttgaatttgatcttgaaattaaagcttcatgtagagggtttatatat |
24340311 |
T |
|
Q |
151 |
ttgcaaattcgttcaaaagcttatatatggaatccatccaccggattttatagaaaaatacctttccctcctagtgtttcacatttagttttttatggtt |
250 |
Q |
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| || | | ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||| |||||||||||| |
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|
T |
24340312 |
gttcacacttgttcagaagcttatatatggaatccatccaccggatttcttagacaaatacctttccctcctaatgtttcaaatttaattttttatggtt |
24340411 |
T |
|
Q |
251 |
ttgggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgt |
350 |
Q |
|
|
||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
24340412 |
ttgggtatgacgaatcaacatatgattacttggtggtttcagtttaatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgt |
24340511 |
T |
|
Q |
351 |
gagccctacccatttgcctttttgtagtaagtcctcttcctttg |
394 |
Q |
|
|
||||||||||||||||||||||||||||||||||||| |||||| |
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|
T |
24340512 |
gagccctacccatttgcctttttgtagtaagtcctctccctttg |
24340555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 244 - 378
Target Start/End: Original strand, 24367144 - 24367278
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacg |
343 |
Q |
|
|
|||||||||||||||||| |||||||||||||||||||||||||||| | || |||| ||||||||||||||||||||||||||||||||||||||| | |
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T |
24367144 |
tatggttttgggtatgacaagtcaacagatgattacttggtggtttcgttatcctatgattacttggggattttctcattgagagctaatgcgtggaatg |
24367243 |
T |
|
Q |
344 |
aaattgtgagccctacccatttgcctttttgtagt |
378 |
Q |
|
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||| |||| | ||||||||||| ||||||||||| |
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|
T |
24367244 |
aaactgtgggtactacccatttggctttttgtagt |
24367278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 24415834 - 24415898
Alignment:
Q |
306 |
cttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctt |
370 |
Q |
|
|
|||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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|
T |
24415834 |
cttgaggattttctcattgagagctaatgtgtggaacgaaattgtgagtcctacccatttgcctt |
24415898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 289
Target Start/End: Original strand, 24310022 - 24310213
Alignment:
Q |
101 |
aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgcaaattcgttcaaaagcttatatatggaatccatccaccggatttta |
200 |
Q |
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||||| ||||||||||| || ||| ||||||||||||||| |||||| | ||| | | |||||| ||| |||||||||||||||||||| || | |
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T |
24310022 |
aatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttca |
24310121 |
T |
|
Q |
201 |
tagaaaaatacctttccctcct---agtgtttcacatttagttttttatggttttgggtatgacgagtcaacagatgattacttggtggttt |
289 |
Q |
|
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|||| ||||||||| |||||| | | ||||| |||| ||| ||||||||||| ||||||||||||| ||||||||||||||| |||| |
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|
T |
24310122 |
tagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagttt |
24310213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 24369476 - 24369526
Alignment:
Q |
243 |
ttatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt |
293 |
Q |
|
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
T |
24369476 |
ttatggttttggctatgacgagtcaacagatgattacctggtggtttcagt |
24369526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 24322835 - 24322892
Alignment:
Q |
316 |
ttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgccttttt |
373 |
Q |
|
|
||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| |
|
|
T |
24322835 |
ttctctttgagagctaatgcgtggaacgaaattgtgggtcctacacatttgccttttt |
24322892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 24322273 - 24322353
Alignment:
Q |
67 |
cctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata |
147 |
Q |
|
|
||||||| |||| |||||| |||| ||||| ||||||||||||||||| || ||| ||||||||||||||||| |||| |
|
|
T |
24322273 |
cctgttctactggaccctaattttttgcttcctaaatcttattttgatcttaaagttagaggttcatgtagagggtatata |
24322353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 24310265 - 24310332
Alignment:
Q |
311 |
ggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagt |
378 |
Q |
|
|
||||||| ||| |||||||||||| ||| |||||||||||||| ||| | ||||| ||||||| |||| |
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|
T |
24310265 |
ggattttttcaatgagagctaatgtgtgcaacgaaattgtgagtcctgcacatttacctttttatagt |
24310332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 24365193 - 24365239
Alignment:
Q |
107 |
attttgatcttcaaattaaaggttcatgtagagggtttataattttg |
153 |
Q |
|
|
||||||||||| |||||| |||||||||||||||||| ||| ||||| |
|
|
T |
24365193 |
attttgatcttaaaattataggttcatgtagagggttcatatttttg |
24365239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0508 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0508
Description:
Target: scaffold0508; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 12069 - 12230
Alignment:
Q |
15 |
atttcgatctatagatttaccgtcattgtttacccacgatgattataacgaacctgttccactgaaccctagttttccacttccggaatcttattttgat |
114 |
Q |
|
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|||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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|
T |
12069 |
atttcgatctatagatttactgtcattgtttagggacgatgattattatgaacctgttccgctgaaccctagttttccacttccggaatctcattttgat |
12168 |
T |
|
Q |
115 |
cttcaaattaaaggttcatgtagagggtttataattttgcaaattcgttcaaaagcttatat |
176 |
Q |
|
|
|||||||||||||||||||||||| |||||||| ||||||| | | ||||||| |||||||| |
|
|
T |
12169 |
cttcaaattaaaggttcatgtagaaggtttatatttttgcacacttgttcaaaggcttatat |
12230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 31)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 45366461 - 45366400
Alignment:
Q |
94 |
cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca |
155 |
Q |
|
|
||||| |||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
T |
45366461 |
cttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgca |
45366400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 45372305 - 45372251
Alignment:
Q |
101 |
aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca |
155 |
Q |
|
|
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
T |
45372305 |
aatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgca |
45372251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 381
Target Start/End: Complemental strand, 49041157 - 49041081
Alignment:
Q |
305 |
acttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagtaag |
381 |
Q |
|
|
|||||| |||||||||||||| |||||||| |||||| ||||||||| | ||| ||||| |||||||||||||||| |
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|
T |
49041157 |
acttggagattttctcattgaaagctaatgtgtggaaggaaattgtgggtactatccattggcctttttgtagtaag |
49041081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 48147801 - 48147754
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttca |
291 |
Q |
|
|
|||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
T |
48147801 |
tatggttttgggtatgaccagttaacagatgattacttggtggtttca |
48147754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 48735466 - 48735419
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttca |
291 |
Q |
|
|
|||||||||||||||||| | | ||||||||||||||||||||||||| |
|
|
T |
48735466 |
tatggttttgggtatgaccatttaacagatgattacttggtggtttca |
48735419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 45372156 - 45372107
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt |
293 |
Q |
|
|
||||| ||||||||||| |||| || |||||||||||||||||||||||| |
|
|
T |
45372156 |
tatggatttgggtatgatgagttaagagatgattacttggtggtttcagt |
45372107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 48870374 - 48870427
Alignment:
Q |
94 |
cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata |
147 |
Q |
|
|
||||| |||||||||| |||| || |||||||||||||||||||||| |||||| |
|
|
T |
48870374 |
cttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttata |
48870427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 48886060 - 48886113
Alignment:
Q |
94 |
cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata |
147 |
Q |
|
|
||||| |||||||||| |||| || |||||||||||||||||||||| |||||| |
|
|
T |
48886060 |
cttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttata |
48886113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 48902925 - 48902982
Alignment:
Q |
240 |
tttttatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttca |
297 |
Q |
|
|
|||||||||||||||||||||| | |||| ||||||||||||| |||| ||| ||||| |
|
|
T |
48902925 |
tttttatggttttgggtatgaccactcaagagatgattacttgatggtatcaatttca |
48902982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 49041248 - 49041199
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt |
293 |
Q |
|
|
||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
T |
49041248 |
tatggttttgggtatgatccgtcaacagatgattacttgatggtttcagt |
49041199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 7908325 - 7908369
Alignment:
Q |
247 |
ggttttgggtatgacgagtcaacagatgattacttggtggtttca |
291 |
Q |
|
|
|||||||| |||||| |||||| |||||||||||||||||||||| |
|
|
T |
7908325 |
ggttttggttatgaccagtcaagagatgattacttggtggtttca |
7908369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 7237806 - 7237763
Alignment:
Q |
245 |
atggttttgggtatgacgagtcaacagatgattacttggtggtt |
288 |
Q |
|
|
|||||||||| |||||| |||||| ||||||||||||||||||| |
|
|
T |
7237806 |
atggttttggttatgaccagtcaagagatgattacttggtggtt |
7237763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 7771396 - 7771439
Alignment:
Q |
245 |
atggttttgggtatgacgagtcaacagatgattacttggtggtt |
288 |
Q |
|
|
|||||||||| |||||| |||||| ||||||||||||||||||| |
|
|
T |
7771396 |
atggttttggttatgaccagtcaagagatgattacttggtggtt |
7771439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 7790081 - 7790124
Alignment:
Q |
245 |
atggttttgggtatgacgagtcaacagatgattacttggtggtt |
288 |
Q |
|
|
|||||||||| |||||| |||||| ||||||||||||||||||| |
|
|
T |
7790081 |
atggttttggttatgaccagtcaagagatgattacttggtggtt |
7790124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 45384952 - 45384905
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttca |
291 |
Q |
|
|
||||||||||||||||| |||||||| ||||||| |||||||||||| |
|
|
T |
45384952 |
tatggttttgggtatgatcagtcaacaaatgattatttggtggtttca |
45384905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 50250865 - 50250818
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttca |
291 |
Q |
|
|
||||||||||| |||||| | |||||||||||||| |||||||||||| |
|
|
T |
50250865 |
tatggttttggttatgaccactcaacagatgattatttggtggtttca |
50250818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 7877727 - 7877773
Alignment:
Q |
245 |
atggttttgggtatgacgagtcaacagatgattacttggtggtttca |
291 |
Q |
|
|
|||||||||| |||||| | |||| |||||||||||||||||||||| |
|
|
T |
7877727 |
atggttttggttatgaccaatcaagagatgattacttggtggtttca |
7877773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 48705442 - 48705396
Alignment:
Q |
245 |
atggttttgggtatgacgagtcaacagatgattacttggtggtttca |
291 |
Q |
|
|
|||||||||| ||||| |||||||||||||||||||||| |||||| |
|
|
T |
48705442 |
atggttttggatatgatcagtcaacagatgattacttggttgtttca |
48705396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 49044428 - 49044378
Alignment:
Q |
105 |
ttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca |
155 |
Q |
|
|
||||||| || |||||| |||| |||||||||||||||||||| ||||||| |
|
|
T |
49044428 |
ttatttttatattcaaactaaatgttcatgtagagggtttatatttttgca |
49044378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 37827217 - 37827176
Alignment:
Q |
114 |
tcttcaaattaaaggttcatgtagagggtttataattttgca |
155 |
Q |
|
|
||||||||||||||||||| ||||||||||| || ||||||| |
|
|
T |
37827217 |
tcttcaaattaaaggttcaggtagagggtttgtatttttgca |
37827176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 48170646 - 48170597
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt |
293 |
Q |
|
|
||||||||||||||||| ||| || |||||||||||| ||||||||||| |
|
|
T |
48170646 |
tatggttttgggtatgatcagttaagagatgattacttagtggtttcagt |
48170597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48852663 - 48852708
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggttt |
289 |
Q |
|
|
|||||||||||||||||| |||||| |||||||||||||| |||| |
|
|
T |
48852663 |
tatggttttgggtatgacccgtcaaccgatgattacttggtagttt |
48852708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48870539 - 48870584
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggttt |
289 |
Q |
|
|
||||||||||||||||| ||| ||||||||||||||| ||||||| |
|
|
T |
48870539 |
tatggttttgggtatgatcagttaacagatgattacttagtggttt |
48870584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48875843 - 48875888
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggttt |
289 |
Q |
|
|
||||||||||||||||| ||| | ||||||||||||||||||||| |
|
|
T |
48875843 |
tatggttttgggtatgatcagttagcagatgattacttggtggttt |
48875888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48886225 - 48886270
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggttt |
289 |
Q |
|
|
||||||||||||||||| ||| ||||||||||||||| ||||||| |
|
|
T |
48886225 |
tatggttttgggtatgatcagttaacagatgattacttagtggttt |
48886270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48898701 - 48898746
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggttt |
289 |
Q |
|
|
||||||||||||||||| ||| ||||||||||||||| ||||||| |
|
|
T |
48898701 |
tatggttttgggtatgatcagttaacagatgattacttagtggttt |
48898746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 48902778 - 48902831
Alignment:
Q |
102 |
atcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca |
155 |
Q |
|
|
||||||||||||||| |||||| ||||||||| ||||||||| || ||||||| |
|
|
T |
48902778 |
atcttattttgatctaaaaattataggttcatgcagagggtttgtacttttgca |
48902831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 7771222 - 7771298
Alignment:
Q |
77 |
tgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg |
153 |
Q |
|
|
|||||| || |||| | ||||| |||||||||||| | || |||||| |||||| ||||||||||||||| ||||| |
|
|
T |
7771222 |
tgaaccttaatttttcgcttccagaatcttattttcctgttgaaattagaggttcgtgtagagggtttatacttttg |
7771298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 7789907 - 7789983
Alignment:
Q |
77 |
tgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg |
153 |
Q |
|
|
|||||| || |||| | ||||| |||||||||||| | || |||||| |||||| ||||||||||||||| ||||| |
|
|
T |
7789907 |
tgaaccttaatttttcgcttccagaatcttattttcctgtttaaattagaggttcgtgtagagggtttatacttttg |
7789983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 45366371 - 45366327
Alignment:
Q |
178 |
tggaatccatccaccggattttatagaaaaatacctttccctcct |
222 |
Q |
|
|
|||||||||||||| |||||| ||| |||||||||||| |||||| |
|
|
T |
45366371 |
tggaatccatccactggatttcataaaaaaatacctttgcctcct |
45366327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 49048657 - 49048613
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtt |
288 |
Q |
|
|
|||||||||||||||||| |||||||||||||| ||||||||| |
|
|
T |
49048657 |
tatggttttgggtatgacccatcaacagatgattatttggtggtt |
49048613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 29696203 - 29696250
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttca |
291 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
29696203 |
tatggttttgggtatgacgagtcaacagatgattacttggtgatttca |
29696250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 179031 - 179083
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttc |
296 |
Q |
|
|
||||||||||||||||| ||||||||||||||||||||| |||| ||| |||| |
|
|
T |
179031 |
tatggttttgggtatgaggagtcaacagatgattacttgttggtgtcaatttc |
179083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 29712456 - 29712421
Alignment:
Q |
314 |
ttttctcattgagagctaatgcgtggaacgaaattg |
349 |
Q |
|
|
||||||||||||||||| |||||||||||||||||| |
|
|
T |
29712456 |
ttttctcattgagagctgatgcgtggaacgaaattg |
29712421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 29712550 - 29712504
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttc |
290 |
Q |
|
|
||||||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
T |
29712550 |
tatggttttgggtatgacgagtcaagggatgattacttcgtgctttc |
29712504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 42562567 - 42562513
Alignment:
Q |
101 |
aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca |
155 |
Q |
|
|
|||||||||| ||| || |||||||||||| ||||||||||||||| ||||||| |
|
|
T |
42562567 |
aatcttatttcgatattggaattaaaggttcgtgtagagggtttatacttttgca |
42562513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 11006037 - 11005988
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt |
293 |
Q |
|
|
|||||||||||||||||| | |||| |||||||||||||||||| ||||| |
|
|
T |
11006037 |
tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt |
11005988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 11024612 - 11024563
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt |
293 |
Q |
|
|
|||||||||||||||||| | |||| |||||||||||||||||| ||||| |
|
|
T |
11024612 |
tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt |
11024563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 47451995 - 47451946
Alignment:
Q |
240 |
tttttatggttttgggtatgacgagtcaacagatgattacttggtggttt |
289 |
Q |
|
|
||||||| | |||||||||||||||| ||||||||||||||| ||||||| |
|
|
T |
47451995 |
tttttattggtttgggtatgacgagttaacagatgattacttagtggttt |
47451946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 47452131 - 47452092
Alignment:
Q |
113 |
atcttcaaattaaaggttcatgtagagggtttataatttt |
152 |
Q |
|
|
||||| ||||||||||||||||||||||||||||| |||| |
|
|
T |
47452131 |
atcttgaaattaaaggttcatgtagagggtttatactttt |
47452092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 11015600 - 11015551
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt |
293 |
Q |
|
|
|||||||||||||||||| | | || |||||||||||||||||| ||||| |
|
|
T |
11015600 |
tatggttttgggtatgaccatttaagagatgattacttggtggtatcagt |
11015551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 4031985 - 4031938
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtttca |
291 |
Q |
|
|
|||||||||||||||||| |||||||| |||| ||| ||||||||||| |
|
|
T |
4031985 |
tatggttttgggtatgaccagtcaacaaatgactacctggtggtttca |
4031938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 12200304 - 12200349
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggttt |
289 |
Q |
|
|
||||||||||| |||||| ||||| |||||||||||||||||||| |
|
|
T |
12200304 |
tatggttttggttatgaccggtcaagagatgattacttggtggttt |
12200349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 12444732 - 12444777
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggttt |
289 |
Q |
|
|
||||||||||| |||||| ||||| |||||||||||||||||||| |
|
|
T |
12444732 |
tatggttttggttatgaccggtcaagagatgattacttggtggttt |
12444777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 21979722 - 21979678
Alignment:
Q |
244 |
tatggttttgggtatgacgagtcaacagatgattacttggtggtt |
288 |
Q |
|
|
||||||||||| |||||| |||||| | ||||||||||||||||| |
|
|
T |
21979722 |
tatggttttggttatgaccagtcaagaaatgattacttggtggtt |
21979678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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