View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503_high_12 (Length: 378)

Name: NF1503_high_12
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503_high_12
NF1503_high_12
[»] chr3 (4 HSPs)
chr3 (1-363)||(5398575-5398937)
chr3 (155-363)||(41239061-41239273)
chr3 (161-225)||(40800453-40800517)
chr3 (155-203)||(41584553-41584601)
[»] chr2 (4 HSPs)
chr2 (155-363)||(26364185-26364395)
chr2 (216-363)||(23876118-23876269)
chr2 (162-225)||(43789437-43789500)
chr2 (155-301)||(8163808-8163953)
[»] chr5 (8 HSPs)
chr5 (154-225)||(3138048-3138119)
chr5 (155-230)||(28376891-28376966)
chr5 (154-229)||(36220553-36220627)
chr5 (155-224)||(29312271-29312340)
chr5 (162-229)||(28111625-28111692)
chr5 (155-229)||(26316920-26316994)
chr5 (49-109)||(16115160-16115220)
chr5 (155-229)||(5749308-5749382)
[»] scaffold0237 (1 HSPs)
scaffold0237 (154-225)||(4546-4617)
[»] chr6 (2 HSPs)
chr6 (154-225)||(29858344-29858415)
chr6 (47-104)||(11569648-11569705)
[»] chr8 (2 HSPs)
chr8 (161-224)||(38661053-38661116)
chr8 (162-225)||(40375232-40375295)
[»] chr4 (3 HSPs)
chr4 (186-229)||(31807076-31807119)
chr4 (162-229)||(36729519-36729586)
chr4 (258-323)||(31806993-31807059)
[»] chr7 (3 HSPs)
chr7 (171-227)||(32439909-32439965)
chr7 (154-229)||(12912111-12912186)
chr7 (159-229)||(12923857-12923927)


Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 5398937 - 5398575
Alignment:
Q  1 ttgtacaaatatcatttctcttttttatatttacaacccacacatttttgttcgaacatcggtgtgaagttggaaataaattaaaagattaaacaccaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  5398937 ttgtacaaatatcatttctcttttttatatttacaacccacacatttttgttcaaacatcagtgtgaagttggaaataaattaaaagattaaacaccaaa 5398838  T
Q  101 taataagacgttgcgctagaaataacctcaaaattatgattaagtaaaactttaggtgaagtttaacctgggaatggaaacttggttcccaccatgggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5398837 taataagacgttgcgctagaaataacctcaaaattatgattaagtaaaactttaggtgaagtttaacctgggaatggaaacttggttcccaccatgggaa 5398738  T
Q  201 agttccaattcccaggacaggtggcagttggcaacctgctagggagagagaaaaaacaaaactgaaaatagatttctaatgtttctttgtttcttccagt 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5398737 agttccaattcccaggacaggtggcacttggcaacctgctagggagagagaaaaaacaaaactgaaaatagatttctaatgtttctttgtttcttccagt 5398638  T
Q  301 gcaccccccatttacttcagtatggtctcatcactctcatttctttctttccagaactgattt 363  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  5398637 gcaccccccatttacttcagtatggtcttatcactctcatttctttctttccagaattgattt 5398575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 155 - 363
Target Start/End: Complemental strand, 41239273 - 41239061
Alignment:
Q  155 ggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcagttggcaacctgctagggagagagaaaa 254  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||    
T  41239273 ggtgaagtttaacctgggaatgaaaacttggttcccaccatgggaaagtttcaattcccaggacaggtggcagttgacaacctgctatggagagagagaa 41239174  T
Q  255 aacaaaactgaaaatagatttctaatgtttctttgtttcttccagtgcaccccccatttacttcagtatggtctcatcac-----tctcatttctttctt 349  Q
    || ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| ||     |||||||||||||||    
T  41239173 aaaaaatctgaaaatagatttctaatgttt-tttgtttcttcccgtgcaccccccatttacttcagtattgtctcatgactctcatctcatttctttctt 41239075  T
Q  350 tccagaactgattt 363  Q
    ||||||||||||||    
T  41239074 tccagaactgattt 41239061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 40800453 - 40800517
Alignment:
Q  161 gtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggc 225  Q
    |||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40800453 gtttaatctggaaatggaaacttgtttcccaccatgggaaagttccaattcccaggacaggtggc 40800517  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 41584553 - 41584601
Alignment:
Q  155 ggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagt 203  Q
    |||| ||||||||||||||| ||||||||  ||||||| ||||||||||    
T  41584553 ggtgcagtttaacctgggaaaggaaacttctttcccactatgggaaagt 41584601  T

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Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 155 - 363
Target Start/End: Original strand, 26364185 - 26364395
Alignment:
Q  155 ggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcagttggcaacctgctagggagagaga-aa 253  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |     
T  26364185 ggtgaagtttaac-tgggaatggaaacttggttcccaccatgggaaagttccaattcc--ggacaggtggcagttggcaacctgctagggagagagagag 26364281  T
Q  254 aaacaaaactgaaaatagatttctaatgtttctttgtttcttccagtgcaccccccatttacttcagtatggtctcatcac-----tctcatttctttct 348  Q
    ||| ||||||||||||||||||||||||||| | |||||| ||| ||||||||||||||||||||||||| ||||||| ||     ||||||||||||||    
T  26364282 aaaaaaaactgaaaatagatttctaatgttt-tatgtttcatcccgtgcaccccccatttacttcagtattgtctcatgactctcatctcatttctttct 26364380  T
Q  349 ttccagaactgattt 363  Q
    |||||||||||||||    
T  26364381 ttccagaactgattt 26364395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 216 - 363
Target Start/End: Original strand, 23876118 - 23876269
Alignment:
Q  216 gacaggtggcagttggcaacctgctagggagagagaaaaaacaaaactgaaaatagatttctaatgtttctttgtttcttccagtgcaccccccatttac 315  Q
    |||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||    
T  23876118 gacatgtgacagttggcaacctgctagggagagaaaaaaaaaaaaactgaaaatagaattttaatgttt-tttgtttcttccagtgcacctcccatttac 23876216  T
Q  316 ttcagtatggtctcatcactctcat-----ttctttctttccagaactgattt 363  Q
    |||||||| ||||||||||||||||     ||||||||||||| |||||||||    
T  23876217 ttcagtattgtctcatcactctcatttcatttctttctttccataactgattt 23876269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 43789437 - 43789500
Alignment:
Q  162 tttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggc 225  Q
    ||||||||||||||||| ||||  ||||||||||||||||| | || ||||||| |||||||||    
T  43789437 tttaacctgggaatggatacttctttcccaccatgggaaaggttcatttcccagtacaggtggc 43789500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 8163808 - 8163953
Alignment:
Q  155 ggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcagttggcaacctgctagggagagagaaaa 254  Q
    ||||| ||||||||||||||| || | ||  || ||||||| ||||||| |   || | || |||||||||||||| ||||  | ||||||||   ||||    
T  8163808 ggtgacgtttaacctgggaattgagagtttttttccaccataggaaagtcctcttttctagaacaggtggcagttgacaacaggttagggagaataaaaa 8163907  T
Q  255 aacaaaactgaaaatagatttctaatgtttctttgtttcttccagtg 301  Q
    || |||||||||||  ||||| |||||||| ||||||||||||||||    
T  8163908 aaaaaaactgaaaaatgatttttaatgttt-tttgtttcttccagtg 8163953  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 3138048 - 3138119
Alignment:
Q  154 aggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3138048 aggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggc 3138119  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 28376891 - 28376966
Alignment:
Q  155 ggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcagttg 230  Q
    ||||||||||| |||||||||||||||||| |||| ||||| |||||||| ||||| |||||||||||||||||||    
T  28376891 ggtgaagtttagcctgggaatggaaacttgtttcctaccattggaaagtttcaatttccaggacaggtggcagttg 28376966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 36220627 - 36220553
Alignment:
Q  154 aggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcagtt 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||| ||||||    
T  36220627 aggtgaagtttaacctgggaatggaaacttgg-tcccaccatggaaaagctccaattcccaagacaggtagcagtt 36220553  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 29312271 - 29312340
Alignment:
Q  155 ggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtgg 224  Q
    |||||||||||||||||||||||||| ||||||  ||||||  ||||||| |||||||||||||||||||    
T  29312271 ggtgaagtttaacctgggaatggaaatttggttttcaccatctgaaagtttcaattcccaggacaggtgg 29312340  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 28111625 - 28111692
Alignment:
Q  162 tttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcagtt 229  Q
    ||||||||||| ||| | ||||  |||||||||||||||||| ||| | |||||||||||||||||||    
T  28111625 tttaacctggggatgaacacttttttcccaccatgggaaagtgccattccccaggacaggtggcagtt 28111692  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 26316920 - 26316994
Alignment:
Q  155 ggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcagtt 229  Q
    |||| ||||||||||||||| ||||||||  |||||||||||||||||| ||   ||||||||||| || |||||    
T  26316920 ggtgcagtttaacctgggaaaggaaacttctttcccaccatgggaaagtcccttctcccaggacagctgtcagtt 26316994  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 16115160 - 16115220
Alignment:
Q  49 tgttcgaacatcggtgtgaagttggaaataaattaaaagattaaacaccaaataataagac 109  Q
    |||| ||||||  ||||||||||||||| |||||  ||||||||||||||| |||||||||    
T  16115160 tgttggaacattcgtgtgaagttggaaagaaattggaagattaaacaccaagtaataagac 16115220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 5749382 - 5749308
Alignment:
Q  155 ggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcagtt 229  Q
    |||| ||||||||||||||| ||||||||  ||||||| |||||||||| ||   ||||||||||| || |||||    
T  5749382 ggtgcagtttaacctgggaaaggaaacttctttcccacaatgggaaagtcccttctcccaggacagctgtcagtt 5749308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 4617 - 4546
Alignment:
Q  154 aggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggc 225  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4617 aggtgaagtttaacctgggaatggaaacttggttcccaccataggaaagttccaattcccaggacaggtggc 4546  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 29858415 - 29858344
Alignment:
Q  154 aggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggc 225  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29858415 aggtgaagtttaacctgggaatggaaacttggttcccaccataggaaagttccaattcccaggacaggtggc 29858344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 11569648 - 11569705
Alignment:
Q  47 tttgttcgaacatcggtgtgaagttggaaataaattaaaagattaaacaccaaataat 104  Q
    |||||| ||||||  |||||| |||| |||||||||| ||||||||||||||| ||||    
T  11569648 tttgttggaacattagtgtgatgttgcaaataaattagaagattaaacaccaagtaat 11569705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 38661116 - 38661053
Alignment:
Q  161 gtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtgg 224  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| ||||    
T  38661116 gtttaacctgggaatggaaacttgtttcctaccatgggaaagttccaattcccaagacatgtgg 38661053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 40375295 - 40375232
Alignment:
Q  162 tttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggc 225  Q
    |||| |||||||||||| ||||  |||||||||||||||||| ||| |||||||||||||||||    
T  40375295 tttagcctgggaatggatacttctttcccaccatgggaaagtgccatttcccaggacaggtggc 40375232  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 31807119 - 31807076
Alignment:
Q  186 ttcccaccatgggaaagttccaattcccaggacaggtggcagtt 229  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  31807119 ttcccaccatgggaaagttccatttcccaggacaggtggcagtt 31807076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 36729519 - 36729586
Alignment:
Q  162 tttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcagtt 229  Q
    ||||||||||| ||| | ||||  |||||||||||||||||| ||| | |||||||||||||||||||    
T  36729519 tttaacctggggatgaacacttttttcccaccatgggaaagtgccattccccaggacaggtggcagtt 36729586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 31807059 - 31806993
Alignment:
Q  258 aaaactgaaaatagatttctaatgtttctttgtttcttccagtg-caccccccatttacttcagtat 323  Q
    ||||||||||||| |||| |||| ||| ||||||| ||| | || ||||||||||||||||||||||    
T  31807059 aaaactgaaaataaatttttaatttttttttgtttattctaatggcaccccccatttacttcagtat 31806993  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 32439965 - 32439909
Alignment:
Q  171 ggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcag 227  Q
    |||||||| ||||| ||||||||||||||||||||||  ||||||||||| ||||||    
T  32439965 ggaatggatacttgtttcccaccatgggaaagttccatatcccaggacagctggcag 32439909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 12912111 - 12912186
Alignment:
Q  154 aggtgaagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcagtt 229  Q
    |||| ||||||| |||||||||||||  ||  |||||||||||||||||  |||  ||||||||||||||||||||    
T  12912111 aggttaagtttagcctgggaatggaattttctttcccaccatgggaaagggccacatcccaggacaggtggcagtt 12912186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 12923927 - 12923857
Alignment:
Q  159 aagtttaacctgggaatggaaacttggttcccaccatgggaaagttccaattcccaggacaggtggcagtt 229  Q
    ||||||| |||||||||||||  ||  |||||||||||||||||  |||  ||||||||||||||||||||    
T  12923927 aagtttagcctgggaatggaattttctttcccaccatgggaaagggccatatcccaggacaggtggcagtt 12923857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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