View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503_high_14 (Length: 371)
Name: NF1503_high_14
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1503_high_14 |
| |
|
[»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 371
Target Start/End: Original strand, 10189996 - 10190358
Alignment:
Q |
12 |
caatatgaaataatataatcataatgcaatatctg---atattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaag |
108 |
Q |
|
|
||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
T |
10189996 |
caatatgaaataatagaatcataagacaatatctgcagatattacgatactccactgatgatatatgcttacctaactcatcaacaaggatagttagaag |
10190095 |
T |
|
Q |
109 |
aaagtcatgaacatgtgttacttgcaagcagcctaaaactgattagatgtctaaaggtcatgttaaatttaacttttatatctgaaacaatgttcctaaa |
208 |
Q |
|
|
||| |||||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| ||| ||||||| ||||||| ||||||| |||||||| |
|
|
T |
10190096 |
aaaatcatgaacatgtgttacttgcaagcaccctaaaactgattagacgtttaatggtcatgtcaaacttaacttctatatcttaaacaattttcctaaa |
10190195 |
T |
|
Q |
209 |
gagggaaattgtgaaaacatattgtattttaggaaagacgatgtcattgtaggtaaatctcaaaatccagaatcaccccacaatgaccatccaaaacata |
308 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
T |
10190196 |
gagggaaattgtgaaaacatattgtactttaggaaagacgatgtcattgtaggtaaatctcaaaatccagaatcacaccacaatgaccatccaaaacata |
10190295 |
T |
|
Q |
309 |
aggagacacaaaatcatacgaggtaagagagcaccacaaacatcgttcaaatttactatgaaa |
371 |
Q |
|
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
10190296 |
aggagacacaaactcatacgaggtaagagagcaccacaaacatcgttcaaatttactatgaaa |
10190358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 37517579 - 37517668
Alignment:
Q |
46 |
gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa |
135 |
Q |
|
|
||||||| |||||||||||| ||| ||||| | ||||||| ||||||| ||||| |||||||||| |||||| |||||| | ||||||| |
|
|
T |
37517579 |
gatattatgatactccactggtgacatatgttgacctaacccatcaatcgggatacttagaagaaaatcatgagcatgtgctgcttgcaa |
37517668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 500717 - 500806
Alignment:
Q |
46 |
gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa |
135 |
Q |
|
|
|||| |||| ||||||| || ||| ||||||| ||||||||||||||| ||||| | ||||||||| |||||| ||| || | ||||||| |
|
|
T |
500717 |
gatagtacggtactccattggtgacatatgctgacctaactcatcaatcaggattgctagaagaaaatcatgagcatatgctgcttgcaa |
500806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 53170988 - 53171077
Alignment:
Q |
46 |
gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa |
135 |
Q |
|
|
|||| ||||||||||||||||||||||||||| | ||||| ||||||| ||||||| ||||||||| || ||| |||||| | ||||||| |
|
|
T |
53170988 |
gatagtacgatactccactgatgatatatgctgaactaacccatcaattaggatagctagaagaaaatcctgagcatgtgctgcttgcaa |
53171077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 4412683 - 4412597
Alignment:
Q |
46 |
gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttg |
132 |
Q |
|
|
|||| ||||||||||||||| ||| ||||||| ||||||||||||||| |||||| ||||||||| || ||| |||||||| |||| |
|
|
T |
4412683 |
gatagtacgatactccactggtgacatatgctgacctaactcatcaatcgggatagctagaagaaaatcctgagcatgtgttgcttg |
4412597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 19161444 - 19161344
Alignment:
Q |
45 |
tgatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaa |
144 |
Q |
|
|
||||| ||||||||||||||||||| ||||||| ||||||| |||||| ||||||| ||||||||| || ||| ||| | || ||||||| || ||||| |
|
|
T |
19161444 |
tgatagtacgatactccactgatgacatatgctgacctaacctatcaatcaggatagctagaagaaaatcctgagcatatattgcttgcaaacatcctaa |
19161345 |
T |
|
Q |
145 |
a |
145 |
Q |
|
|
| |
|
|
T |
19161344 |
a |
19161344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 9685032 - 9684967
Alignment:
Q |
46 |
gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa |
111 |
Q |
|
|
|||| ||||||||||||||| ||| ||||||| ||||||| |||||||| |||||| ||||||||| |
|
|
T |
9685032 |
gatagtacgatactccactggtgacatatgctgacctaacccatcaatagggatagctagaagaaa |
9684967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 18744635 - 18744570
Alignment:
Q |
46 |
gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa |
111 |
Q |
|
|
|||| ||||||||||||||| ||| ||||||| ||||||| ||||||| |||||| ||||||||| |
|
|
T |
18744635 |
gatagtacgatactccactggtgacatatgctaacctaacccatcaatcgggatagctagaagaaa |
18744570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 41867525 - 41867460
Alignment:
Q |
46 |
gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa |
111 |
Q |
|
|
|||| ||||||||||||||| ||| ||||||| ||||||| ||||||| |||||| ||||||||| |
|
|
T |
41867525 |
gatagtacgatactccactggtgacatatgctgacctaacccatcaatcgggatagctagaagaaa |
41867460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 17345128 - 17345217
Alignment:
Q |
46 |
gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa |
135 |
Q |
|
|
|||| |||||||||||||| ||| |||||| ||||||| ||||||| |||||| ||||||||| || ||| |||||| | ||||||| |
|
|
T |
17345128 |
gatagtacgatactccactagtgacatatgccgacctaacccatcaattgggatagctagaagaaaatcttgagcatgtggttcttgcaa |
17345217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 20142357 - 20142268
Alignment:
Q |
46 |
gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa |
135 |
Q |
|
|
|||| ||| ||||||||||| ||| ||||||| || |||| ||||||| |||||| ||||||||| || ||| |||||| | ||||||| |
|
|
T |
20142357 |
gatagtacaatactccactgttgacatatgctgacttaacccatcaatcgggatagctagaagaaaatcctgagcatgtgctgcttgcaa |
20142268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 53786198 - 53786287
Alignment:
Q |
46 |
gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa |
135 |
Q |
|
|
|||| ||||||||||||||| ||| ||||||| ||||||| ||||||| || |||| ||||||||| || ||| |||||| | ||||||| |
|
|
T |
53786198 |
gataatacgatactccactggtgacatatgctgacctaacccatcaatcagaatagctagaagaaaatcttgagcatgtggtgcttgcaa |
53786287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 52411513 - 52411442
Alignment:
Q |
52 |
acgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatg |
123 |
Q |
|
|
||||||||||||| ||| ||||||| || |||||||||||| |||||| ||||||||| |||||| |||| |
|
|
T |
52411513 |
acgatactccactcgtgacatatgctgacttaactcatcaatcgggatagctagaagaaaatcatgagcatg |
52411442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 49018449 - 49018542
Alignment:
Q |
53 |
cgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaaaa |
146 |
Q |
|
|
|||||||||||| ||| || ||| ||||||| ||||||| ||||||| ||||||||| |||||| ||||| | ||||||| || ||||||| |
|
|
T |
49018449 |
cgatactccacttgtgacatgcgctgacctaacccatcaatcaggatagctagaagaaaatcatgagcatgtactgcttgcaaacatcctaaaa |
49018542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 7794522 - 7794453
Alignment:
Q |
56 |
tactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtg |
125 |
Q |
|
|
|||||||||| ||||||||| | ||||||| ||||||||||||||| || |||||| |||||| |||||| |
|
|
T |
7794522 |
tactccactggtgatatatgttgacctaacccatcaataaggatagctataagaaaatcatgagcatgtg |
7794453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 37200753 - 37200834
Alignment:
Q |
54 |
gatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa |
135 |
Q |
|
|
||||||||||| ||| ||||||| ||||||| |||| ||| ||||||||| |||||| | |||| |||||| ||||||||| |
|
|
T |
37200753 |
gatactccactagtgacatatgctgacctaacccatccatatggatagttaaaagaaaatgatgagcatgtgctacttgcaa |
37200834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 19035925 - 19035982
Alignment:
Q |
54 |
gatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa |
111 |
Q |
|
|
|||||||||||| ||| ||||| | ||||||||||||||| |||||| ||||||||| |
|
|
T |
19035925 |
gatactccactggtgacatatgttgacctaactcatcaatcgggatagctagaagaaa |
19035982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 47679647 - 47679714
Alignment:
Q |
82 |
taactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaaaactg |
149 |
Q |
|
|
|||||||||||| ||||||| ||||||||| || ||| |||||| ||||||||| || |||||||||| |
|
|
T |
47679647 |
taactcatcaatcaggatagctagaagaaaatcctgagcatgtgctacttgcaaacatcctaaaactg |
47679714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 23910894 - 23910804
Alignment:
Q |
59 |
tccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaaaactg |
149 |
Q |
|
|
||||||| ||| ||||||| ||||||||||||||| |||||||||||| ||| | | |||||||||| ||||||| || ||| |||||| |
|
|
T |
23910894 |
tccactggtgacatatgctaacctaactcatcaattgggatagttagaaaaaaattctaaacatgtgttgcttgcaaacaccctcaaactg |
23910804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 3113804 - 3113681
Alignment:
Q |
28 |
aatcataatgcaatatct---gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgt |
124 |
Q |
|
|
|||||||| ||||||||| |||| |||||||||||||| |||| |||||| |||||| |||||||| |||||| ||| ||||| || ||| ||||| |
|
|
T |
3113804 |
aatcataaggcaatatctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggagaaaatcttgagcatgt |
3113705 |
T |
|
Q |
125 |
gttacttgcaagcagcctaaaact |
148 |
Q |
|
|
| | ||| ||| || ||||||||| |
|
|
T |
3113704 |
gctgcttccaaacaccctaaaact |
3113681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 15291640 - 15291575
Alignment:
Q |
46 |
gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa |
111 |
Q |
|
|
|||| ||||||||||||||| ||| ||||||| ||||||| ||||||| |||||| ||||||||| |
|
|
T |
15291640 |
gatagtacgatactccactggtgacatatgctgacctaacccatcaattgggatagctagaagaaa |
15291575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 8344 times since January 2019
Visitors: 7802