View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_high_15 (Length: 364)
Name: NF1503_high_15
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 28884595 - 28884248
Alignment:
| Q |
21 |
cataaactattccccaaggcaaccaacaaatgcccacggacatatgttggacaccacatacgttcttcagtctgaagagtcggtgctacattaatttacc |
120 |
Q |
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| T |
28884595 |
cataaactataccccaaggcaaccaacaaatgcccacggacatatgttggacaccacatacgttcttcagtatgaagagtcggtgctacattaatttacc |
28884496 |
T |
|
| Q |
121 |
agtccctat-----------------gactaagctatgctgctaacttgggttccctagagattttcctagaaggaaaaggaacagtcttgaactcctgc |
203 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28884495 |
agtccctatctactaaataaacctatgactaagctatgctgctaacttgggttccctagagattttcctagaaggaaaaggaacagtcttgaactcctgc |
28884396 |
T |
|
| Q |
204 |
aacaatgacttatgcaacaatctatcaactctggtaagtcctgtaagaccaacattatcagggtcttgtaaaataggattatgcaaaggattcaatgctt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28884395 |
aacaatgacttatgcaacaatctatcaactctggtaagtcctgtaagaccaacattatcagggtcttgtaaaataggattatgcaaaggattcaatgctt |
28884296 |
T |
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| Q |
304 |
ccaaattagacctcaacatcttatccttcttcaaaaaatcaccttttt |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28884295 |
ccaaattagacctcaacatcttatccttcttcaaaaaatcaccttttt |
28884248 |
T |
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