View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_high_2 (Length: 584)
Name: NF1503_high_2
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 248 - 569
Target Start/End: Original strand, 43181611 - 43181931
Alignment:
| Q |
248 |
tcacttcttcattcatttagttttcctaaaagcaagtaacttttagcagcctatgttttcaggtgtcccagaaaatgtagcaaatatctttgtccatcca |
347 |
Q |
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| T |
43181611 |
tcacttcttcattcatttagttttcctaaaagcaagtaacttttagcagcctatgttttcaggtgtccca-aaaatgtagcaaatatctttgtccatcca |
43181709 |
T |
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| Q |
348 |
agtcataaggcaacaatgaaaaagctaataatttctcatacgtggctaataaagatcataaaattgattaaagtatatctcaaaagaaaacaaaatagaa |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43181710 |
agtcataaggcaacaatgaaaaagctaataatttctcatacgtggctaataaagatcataaagttgattaaagtatatctcaaaagaaaacaaaatagaa |
43181809 |
T |
|
| Q |
448 |
agtagtagaacctgcccatgagccaattgaatgcatgctcctgaatgtaggatatctaatgcttcagtgtacctctgagcagttacatatctgcagaaaa |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43181810 |
agtagtagaacctgcccatgagccaattgaatgcatgctcctgaatgtaggatatctaatgcttcagtgtacctctgagcagttacatatctgcagaaaa |
43181909 |
T |
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| Q |
548 |
acgtgtacgcacatcagtttct |
569 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
43181910 |
acgtgtacgcacatcagtttct |
43181931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 43181309 - 43181611
Alignment:
| Q |
9 |
catcatcataaggaattttcccttttactaatgtctccacaaacaataaagcaagctctgctccacaggtaaccttagataaatagaagataaaacttaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43181309 |
catcatcataaggaattttcccttttactaatgtctccacaaacaataaagcaagctctgctccacaggtaaccttagataaatagaagataaaacttaa |
43181408 |
T |
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| Q |
109 |
acttttttgtttgtcaattgttaaaactatttgcatatattcttatcataaagttaaaaattaaaactaaatgtaaatttggatagaaatgtcaaaagga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43181409 |
acttttttgtttgtcaattgttaaaactatttgcatatattcttatcataaagttaaaaattaaaactaaatgtaaatttggatagaaatgtcaaaagga |
43181508 |
T |
|
| Q |
209 |
ttcaggatcctccatctgtgcctttcctttctctcttgatcacttcttcattcatttagttttcctaaaagcaagtaacttttagcagcctatgttttca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43181509 |
ttcaggatcctccatctgtgcctttcctttctctcttgatcacttcttcattcatttagttttcctaaaagcaagtaacttttagcagcctatgttttca |
43181608 |
T |
|
| Q |
309 |
ggt |
311 |
Q |
| |
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||| |
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| T |
43181609 |
ggt |
43181611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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