View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_high_21 (Length: 289)
Name: NF1503_high_21
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 56 - 257
Target Start/End: Complemental strand, 35279020 - 35278820
Alignment:
| Q |
56 |
gacaaggtctccatacatatcaaatattaatttgagacttccattatatattatttccnnnnnnnnaatgataaatgttaatagttagttgttagattaa |
155 |
Q |
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| T |
35279020 |
gacaaggtctccatacatatcaaatattaatttgagacttccattatatattatttccttttttt-aatgataaatgttaatagttaattgttagattaa |
35278922 |
T |
|
| Q |
156 |
tattatactccttcatcggttttgaattcaagatcatcaagttcaaatctcttagctcaaattagttgaactacttaaccttattatcatatgtagatct |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35278921 |
tattatactccttcatcggttttgaattcaagatcatcaacttcaaatctcttagctcaaattagttgaactacttaaccttattatcatatgtagatct |
35278822 |
T |
|
| Q |
256 |
ct |
257 |
Q |
| |
|
|| |
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|
| T |
35278821 |
ct |
35278820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 39389340 - 39389306
Alignment:
| Q |
122 |
aatgataaatgttaatagttagttgttagattaat |
156 |
Q |
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| T |
39389340 |
aatgataaatgttaatagttagttgttagattaat |
39389306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 39389529 - 39389495
Alignment:
| Q |
122 |
aatgataaatgttaatagttagttgttagattaat |
156 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
39389529 |
aatgataaatgttaatagttagttgttagattaat |
39389495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 32775785 - 32775743
Alignment:
| Q |
122 |
aatgataaatgttaatagttagttgttagattaatattatact |
164 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |||| |
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| T |
32775785 |
aatgacaaatgttattagttagttgttagattaatattgtact |
32775743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 48308090 - 48308127
Alignment:
| Q |
122 |
aatgataaatgttaatagttagttgttagattaatatt |
159 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||| |
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| T |
48308090 |
aatgacaaatgttagtagttagttgttagattaatatt |
48308127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 20601902 - 20601860
Alignment:
| Q |
128 |
aaatgttaatagttagttgttagattaatattatactccttcat |
171 |
Q |
| |
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|
| T |
20601902 |
aaatgttaatagttagttgttaaattaatatt-tactccttcat |
20601860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 38492951 - 38493000
Alignment:
| Q |
122 |
aatgataaatgttaatagttagttgttagattaatattatactccttcatc |
172 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| |||| |||||||||| |
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|
| T |
38492951 |
aatgataaatgttgatggttagttgttagattaattttat-ctccttcatc |
38493000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 26459172 - 26459136
Alignment:
| Q |
122 |
aatgataaatgttaatagttagttgttagattaatat |
158 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |
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|
| T |
26459172 |
aatgataaatattaatagttagttgttaaattaatat |
26459136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 10799304 - 10799261
Alignment:
| Q |
128 |
aaatgttaatagttagttgttagattaatattatactccttcatc |
172 |
Q |
| |
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|||||||| || |||||||||||||||||||| |||||||||||| |
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| T |
10799304 |
aaatgttagtaattagttgttagattaatatt-tactccttcatc |
10799261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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