View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503_high_24 (Length: 269)

Name: NF1503_high_24
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503_high_24
NF1503_high_24
[»] chr6 (2 HSPs)
chr6 (1-257)||(7563953-7564211)
chr6 (1-33)||(34625746-34625778)
[»] chr5 (3 HSPs)
chr5 (1-45)||(28322253-28322297)
chr5 (1-45)||(9895159-9895203)
chr5 (1-33)||(40878405-40878437)
[»] chr4 (4 HSPs)
chr4 (1-44)||(9906786-9906829)
chr4 (3-40)||(27857943-27857980)
chr4 (1-45)||(18783989-18784033)
chr4 (1-33)||(32369927-32369959)
[»] chr8 (5 HSPs)
chr8 (1-35)||(2506194-2506228)
chr8 (1-46)||(3508064-3508109)
chr8 (1-30)||(10170404-10170433)
chr8 (1-33)||(29096958-29096990)
chr8 (1-45)||(33697144-33697188)
[»] chr3 (2 HSPs)
chr3 (5-33)||(36302009-36302037)
chr3 (1-33)||(49636841-49636873)
[»] chr2 (2 HSPs)
chr2 (1-33)||(5461184-5461216)
chr2 (1-33)||(32102875-32102907)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 7564211 - 7563953
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatcatacgtgttggtgctacctaatttgagaactatcttggttacctagttcatgtgttacacaagacatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7564211 aatttgagaaaataaattaattgaatgtaatcatacgtgttggtgctacctaatttgagaactatcttggttacctggttcatgtgttacacaagacatg 7564112  T
Q  101 ccaagccaataaccataacaccgtctatttggttaagtcggtcattgcctatcgacataacatcatctaacacagtgttcctctcc-attgttccctttg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7564111 ccaagccaataaccataacaccgtctatttggttaagtcggtcattgcctatcgacataacatcatctaacacagtgttcctctccaattgttccctttg 7564012  T
Q  200 cctcttagctttaaatacacttcttgtag-tttttgtcattgttacttgggaaaattca 257  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7564011 cctcttagctttaaatacacttcttgtagttttttgtcattgttacttgggaaaattca 7563953  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34625746 - 34625778
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatca 33  Q
    ||||||||||||| |||||||||||||||||||    
T  34625746 aatttgagaaaatgaattaattgaatgtaatca 34625778  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28322253 - 28322297
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 45  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||    
T  28322253 aatttgagaaaatgaattaattgaatgtaatcacatgtgttggtg 28322297  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9895159 - 9895203
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 45  Q
    ||||||||||||||||||| ||||| ||||||| | |||||||||    
T  9895159 aatttgagaaaataaattatttgaacgtaatcacatgtgttggtg 9895203  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40878437 - 40878405
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatca 33  Q
    ||||||||||| |||||||||||||||||||||    
T  40878437 aatttgagaaactaaattaattgaatgtaatca 40878405  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9906786 - 9906829
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatcatacgtgttggt 44  Q
    |||| ||||||||||||||||||||||||||||||  |||||||    
T  9906786 aattagagaaaataaattaattgaatgtaatcatatatgttggt 9906829  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 27857980 - 27857943
Alignment:
Q  3 tttgagaaaataaattaattgaatgtaatcatacgtgt 40  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  27857980 tttgagaaaattaattaattgaatgtaatcacacgtgt 27857943  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18783989 - 18784033
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 45  Q
    ||||||||||||| || |||||||||||||| | |||||||||||    
T  18783989 aatttgagaaaatgaagtaattgaatgtaattacacgtgttggtg 18784033  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32369959 - 32369927
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatca 33  Q
    ||||||||||||| |||||||||||||||||||    
T  32369959 aatttgagaaaatgaattaattgaatgtaatca 32369927  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2506194 - 2506228
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatcata 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  2506194 aattagagaaaataaattaattgaatgtaatcata 2506228  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3508064 - 3508109
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatcatacgtgttggtgc 46  Q
    |||||||||||||||  ||||| |||||||||||| ||||||||||    
T  3508064 aatttgagaaaataacataattcaatgtaatcatatgtgttggtgc 3508109  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10170433 - 10170404
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaa 30  Q
    ||||||||||||||||||||||||||||||    
T  10170433 aatttgagaaaataaattaattgaatgtaa 10170404  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29096958 - 29096990
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatca 33  Q
    ||||| |||||||||||||||||||||||||||    
T  29096958 aatttaagaaaataaattaattgaatgtaatca 29096990  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33697188 - 33697144
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 45  Q
    |||||||||||||||| ||||||||| ||| ||||||||| ||||    
T  33697188 aatttgagaaaataaaataattgaatataaccatacgtgtcggtg 33697144  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 36302009 - 36302037
Alignment:
Q  5 tgagaaaataaattaattgaatgtaatca 33  Q
    |||||||||||||||||||||||||||||    
T  36302009 tgagaaaataaattaattgaatgtaatca 36302037  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 49636873 - 49636841
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatca 33  Q
    ||||||||||||| |||||||||||||||||||    
T  49636873 aatttgagaaaatgaattaattgaatgtaatca 49636841  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5461216 - 5461184
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatca 33  Q
    ||||||||| |||||||||||||||||||||||    
T  5461216 aatttgagataataaattaattgaatgtaatca 5461184  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32102907 - 32102875
Alignment:
Q  1 aatttgagaaaataaattaattgaatgtaatca 33  Q
    |||||||||||||||||||||||||| ||||||    
T  32102907 aatttgagaaaataaattaattgaatataatca 32102875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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