View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503_high_27 (Length: 249)

Name: NF1503_high_27
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503_high_27
NF1503_high_27
[»] chr8 (3 HSPs)
chr8 (74-207)||(37193273-37193406)
chr8 (74-207)||(37182143-37182274)
chr8 (80-156)||(29461186-29461262)
[»] chr3 (2 HSPs)
chr3 (74-208)||(21105366-21105500)
chr3 (74-140)||(42036775-42036841)
[»] scaffold0495 (1 HSPs)
scaffold0495 (76-203)||(10718-10845)
[»] chr6 (2 HSPs)
chr6 (76-203)||(10233990-10234117)
chr6 (133-201)||(4619835-4619903)
[»] scaffold0288 (1 HSPs)
scaffold0288 (133-201)||(969-1037)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 37193406 - 37193273
Alignment:
Q  74 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 173  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||||||  |||    
T  37193406 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccactgtgatttt 37193307  T
Q  174 tcaccatggttttgtgagtttccaaacacaggct 207  Q
    ||||| ||||||  ||||||||||||||||||||    
T  37193306 tcaccgtggtttcatgagtttccaaacacaggct 37193273  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 37182274 - 37182143
Alignment:
Q  74 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 173  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||  ||  |||    
T  37182274 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccac--tgatttt 37182177  T
Q  174 tcaccatggttttgtgagtttccaaacacaggct 207  Q
    ||||| || |||  ||||||||||||||||||||    
T  37182176 tcaccgtgttttcatgagtttccaaacacaggct 37182143  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 29461186 - 29461262
Alignment:
Q  80 ttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagcttt 156  Q
    |||||||||||||||||||||  ||||||| | || | |||| ||| |||| |||||||||||| |  |||||||||    
T  29461186 ttgtgcggtgagtgaccgctaccgcacgtttagagtctatcttaccatggtattgagaagctagttggtgtagcttt 29461262  T

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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 21105500 - 21105366
Alignment:
Q  74 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 173  Q
    |||||||||||| |||||||||||||| |||| ||| |||| ||||||||||||||| || ||||||||| |  |||||||||  ||| || ||||||||    
T  21105500 gtttgtttgtgccgtgagtgaccgctactgcatgtttaaagtcaatctcaccgtggtatttagaagctagttggtgtagctttacgccaaccgtgccttt 21105401  T
Q  174 tcaccatggttttgtgagtttccaaacacaggcta 208  Q
    ||||||||||||||| ||||| |||||||| ||||    
T  21105400 tcaccatggttttgttagttttcaaacacatgcta 21105366  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 42036841 - 42036775
Alignment:
Q  74 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagc 140  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  42036841 gtttatttgtgcggtgagtgaccgctaatgcacattcaaagtcaatatcaccgtggttttgagaagc 42036775  T

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Target: scaffold0495 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 10718 - 10845
Alignment:
Q  76 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 175  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10718 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10817  T
Q  176 accatggttttgtgagtttccaaacaca 203  Q
    ||||||||||||||||||| ||||||||    
T  10818 accatggttttgtgagttttcaaacaca 10845  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 10233990 - 10234117
Alignment:
Q  76 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 175  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10233990 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10234089  T
Q  176 accatggttttgtgagtttccaaacaca 203  Q
    ||||||||||||||||||| ||||||||    
T  10234090 accatggttttgtgagttttcaaacaca 10234117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 4619903 - 4619835
Alignment:
Q  133 tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca 201  Q
    |||||||||||||  |||||||||  ||| || || |||||||||| ||||||||| ||| ||||||||    
T  4619903 tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca 4619835  T

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Target: scaffold0288 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 969 - 1037
Alignment:
Q  133 tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca 201  Q
    |||||||||||||  |||||||||  ||| || || |||||||||| ||||||||| ||| ||||||||    
T  969 tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca 1037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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