View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503_high_28 (Length: 248)
Name: NF1503_high_28
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_high_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30037574 - 30037336
Alignment:
| Q |
1 |
cccttagaagcattaaagtcggtggcagatgatgaagcagaagtggaatttgtattaattccatcattttgtagtatggtttctaacgcttttacaactt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
30037574 |
cccttagaagcattaaagtcagtggcagatgatgaagctgaagtggaatttgtattaattccatcattttgtaatatggtttctaacgctttcacaactt |
30037475 |
T |
|
| Q |
101 |
cactcatcgttggtcggtctgaagccaattcctcaacgcattgcattgccaactctaagaaccttccaaatcctatcaggttggctgtgtttctcaccac |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30037474 |
cactcattgttggtcggtctgaagccaattcctcaacacattgcattgccaactctaagaaccttccaaatcctatcaggttggctgtgtttctcaccac |
30037375 |
T |
|
| Q |
201 |
tggatccattagttcccttaaaccataatactcttcatc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30037374 |
tggatccattagttcccttaaaccataatactcttcatc |
30037336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 30053589 - 30053373
Alignment:
| Q |
24 |
ggcagatgatgaagcagaagtggaatttgtattaattccatcattttgtagtatggtttctaacgcttttacaacttcactcatcgttggtcggtctgaa |
123 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||| | || ||||| || |||| |||||||||||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
30053589 |
ggcagatgaagaagctgaagtagaatttgtaatcatcccatcgttatgtaatatggtttctaaggctttcacaacttcactcattgttggtcggtctgaa |
30053490 |
T |
|
| Q |
124 |
gccaattcctcaacgcattgcattgccaactctaagaaccttccaaatcctatcaggttggctgtgtttctcaccactggatccattagttcccttaaac |
223 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30053489 |
gccaatccctcaacgcattgcattgccaactctaagaaccttccaaatcctatcaggttggctgtgtttctcaccactggatccattagttcccttaaac |
30053390 |
T |
|
| Q |
224 |
cataatactcttcatct |
240 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30053389 |
cataatactcttcatct |
30053373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9821 times since January 2019
Visitors: 7932