View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503_high_32 (Length: 236)

Name: NF1503_high_32
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503_high_32
NF1503_high_32
[»] chr6 (3 HSPs)
chr6 (26-219)||(8880141-8880335)
chr6 (125-218)||(32879035-32879129)
chr6 (126-215)||(1068430-1068519)
[»] chr5 (5 HSPs)
chr5 (1-184)||(40578530-40578712)
chr5 (144-216)||(28360821-28360893)
chr5 (83-189)||(16548198-16548304)
chr5 (133-184)||(27272444-27272495)
chr5 (161-218)||(23068206-23068263)
[»] chr8 (3 HSPs)
chr8 (26-172)||(15331102-15331249)
chr8 (26-172)||(15511471-15511618)
chr8 (144-218)||(21178545-21178619)
[»] chr3 (1 HSPs)
chr3 (29-171)||(27440418-27440561)
[»] chr4 (4 HSPs)
chr4 (35-163)||(14224076-14224203)
chr4 (35-163)||(14234171-14234298)
chr4 (144-218)||(18274048-18274122)
chr4 (170-216)||(9416090-9416136)
[»] chr2 (1 HSPs)
chr2 (35-163)||(28386629-28386756)
[»] scaffold0564 (1 HSPs)
scaffold0564 (35-139)||(1-104)
[»] scaffold0205 (1 HSPs)
scaffold0205 (144-218)||(2954-3028)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 8880141 - 8880335
Alignment:
Q  26 ttgtcgcacctgctcttttacttctttt-taagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaata 124  Q
    |||||||| ||||||||||| || |||| |||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||| ||    
T  8880141 ttgtcgcagctgctcttttatttattttttaagttgctatctgataacaggttcggttctttcgttatttattagctttctatttagtatgaactcagta 8880240  T
Q  125 gaagtaaatttagtgttgaatttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatta 219  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||    
T  8880241 gaagtaaatttagtgtttgatttaattatgtctgagtagtctaacttgagtccaaaatggaaggaccgtcgtactgacggaactcatgtaaatta 8880335  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 32879129 - 32879035
Alignment:
Q  125 gaagtaaatttagtgttgaatttaattatgtctgagtagtct-aacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatt 218  Q
    ||||||||| ||||| | ||||||| ||||  |||||||| | || || ||||||||||||||||||| || |||||| ||||||||||||||||    
T  32879129 gaagtaaatgtagtgcttaatttaagtatgagtgagtagttttaaattcagtccaaaacgaaaggaccgtcctaccgatggaactcatgtaaatt 32879035  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 1068430 - 1068519
Alignment:
Q  126 aagtaaatttagtgttgaatttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaa 215  Q
    |||||| |||||||   |||||||||||   |||||||||||| |||||| ||||||||||||||  | ||||||||| ||||| |||||    
T  1068430 aagtaattttagtgcataatttaattattagtgagtagtctaaattgagttcaaaacgaaaggactgttgtaccgacgaaactcgtgtaa 1068519  T

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Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 40578530 - 40578712
Alignment:
Q  1 aagcttcagattgttgcagtggtgtttgtcgcacctgctcttttacttctttttaagttgccatctgataacatgttaggttctttcattatttattagc 100  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| | ||| ||||| ||    
T  40578530 aagcttcagattgttgcagtggtcattgtcgcacctgctcttttacttctttttaagttgccatctgataacaggttccgttcttacgtta-ttatttgc 40578628  T
Q  101 tttctatttagtatgaagtcaatagaagtaaatttagtgttgaatttaattatgtctgagtagtctaacttgagtccaaaacga 184  Q
    ||||||||||||||||| |||  |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  40578629 tttctatttagtatgaattcagcagaagtaaatttagtgtctaatttaattatgtctgagtagtctaaattgagtccaaaacga 40578712  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 28360821 - 28360893
Alignment:
Q  144 atttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaa 216  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| | ||||||||||||||||||||||||    
T  28360821 atttaattatgtctgagtagtctactttgagtccaaaacgaaaggatcgtcgtaccgacggaactcatgtaaa 28360893  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 16548304 - 16548198
Alignment:
Q  83 ctttcattatttattagctttctatttagtatgaagtcaatagaagtaaatttagtgttgaatttaattatgtctgagtagtctaacttgagtccaaaac 182  Q
    ||||| ||||||||| | ||||| |||| |||||| |||  ||||||||||||||||   ||||||||||||  |||||||||||| |||| ||||||||    
T  16548304 ctttcgttatttatttgttttctctttaatatgaattcagcagaagtaaatttagtgcataatttaattatgagtgagtagtctaaattgaatccaaaac 16548205  T
Q  183 gaaagga 189  Q
    |||||||    
T  16548204 gaaagga 16548198  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 27272444 - 27272495
Alignment:
Q  133 tttagtgttgaatttaattatgtctgagtagtctaacttgagtccaaaacga 184  Q
    ||||||||  |||||||||||||||||||||||||| ||||| |||||||||    
T  27272444 tttagtgtataatttaattatgtctgagtagtctaaattgagcccaaaacga 27272495  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 23068206 - 23068263
Alignment:
Q  161 tagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatt 218  Q
    |||| ||| |||||||| |||| | |||| ||||||| ||||||||||||||||||||    
T  23068206 tagtttaaattgagtccgaaacaagaggaacatcgtatcgacggaactcatgtaaatt 23068263  T

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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 15331102 - 15331249
Alignment:
Q  26 ttgtcgcacctgctcttttacttctttt-taagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaata 124  Q
    |||||||| ||||||||||| || |||| |||||||| ||||||||||| |||  |||||||| ||||||||||| ||||||||||||||||| ||| ||    
T  15331102 ttgtcgcagctgctcttttatttattttttaagttgctatctgataacaggttcagttctttcgttatttattaggtttctatttagtatgaactcagta 15331201  T
Q  125 gaagtaaatttagtgttgaatttaattatgtctgagtagtctaacttg 172  Q
    |||||||||||||||||  ||||| |||||||||||||||||||||||    
T  15331202 gaagtaaatttagtgtttgatttacttatgtctgagtagtctaacttg 15331249  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 15511471 - 15511618
Alignment:
Q  26 ttgtcgcacctgctcttttacttctttt-taagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaata 124  Q
    |||||||| ||||||||||| || |||| |||||||| ||||||||||| |||  |||||||| ||||||||||| ||||||||||||||||| ||| ||    
T  15511471 ttgtcgcagctgctcttttatttattttttaagttgctatctgataacaggttcagttctttcgttatttattaggtttctatttagtatgaactcagta 15511570  T
Q  125 gaagtaaatttagtgttgaatttaattatgtctgagtagtctaacttg 172  Q
    |||||||||||||||||  ||||| |||||||||||||||||||||||    
T  15511571 gaagtaaatttagtgtttgatttacttatgtctgagtagtctaacttg 15511618  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 21178619 - 21178545
Alignment:
Q  144 atttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatt 218  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||   ||||||||||||||||||||| ||||    
T  21178619 atttaattatgtctgagtagtctactttgagtccaaaacgaaaggattgtcgtaccgacggaactcatgtcaatt 21178545  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 27440418 - 27440561
Alignment:
Q  29 tcgcacctgctcttttacttctttt-taagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaatagaa 127  Q
    ||||| ||||||||||| || |||| |||||||| |||||||||||||||  |||||||  ||||||||||||||||||||||||||||| ||| |||||    
T  27440418 tcgcagctgctcttttatttattttttaagttgctatctgataacatgttccgttcttttgttatttattagctttctatttagtatgaactcagtagaa 27440517  T
Q  128 gtaaatttagtgttgaatttaattatgtctgagtagtctaactt 171  Q
    ||||||||||||||  |||||||||||| |||||||||||||||    
T  27440518 gtaaatttagtgtttgatttaattatgtatgagtagtctaactt 27440561  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 14224076 - 14224203
Alignment:
Q  35 ctgctcttttacttctttttaagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaatagaagtaaatt 134  Q
    |||||||||||||  |||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| || ||||| ||||| ||| |||||| | |||    
T  14224076 ctgctcttttactcgttttta-gttgccatctgataacaggttaggtactttcaatatttattagcttcctctttagcatgaactcagtagaaggatatt 14224174  T
Q  135 tagtgttgaatttaattatgtctgagtag 163  Q
    ||||||| |||||||||||||||||||||    
T  14224175 tagtgtttaatttaattatgtctgagtag 14224203  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 14234171 - 14234298
Alignment:
Q  35 ctgctcttttacttctttttaagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaatagaagtaaatt 134  Q
    |||||||||||||  |||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| || ||||| ||||| ||| |||||| | |||    
T  14234171 ctgctcttttactcgttttta-gttgccatctgataacaggttaggtactttcaatatttattagcttcctctttagcatgaactcagtagaaggatatt 14234269  T
Q  135 tagtgttgaatttaattatgtctgagtag 163  Q
    ||||||| |||||||||||||||||||||    
T  14234270 tagtgtttaatttaattatgtctgagtag 14234298  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 18274048 - 18274122
Alignment:
Q  144 atttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatt 218  Q
    |||||||||||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18274048 atttaattatgtttgagtagtctactttgagtccaaaacgaaaggaccgtcgtaccgacggaactcatgtaaatt 18274122  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 9416090 - 9416136
Alignment:
Q  170 ttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaa 216  Q
    ||||||||||||||| || ||| |||||||||||| |||||||||||    
T  9416090 ttgagtccaaaacgagagcaccgtcgtaccgacgggactcatgtaaa 9416136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 28386629 - 28386756
Alignment:
Q  35 ctgctcttttacttctttttaagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaatagaagtaaatt 134  Q
    |||||||||||||  |||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| || ||||| ||||| ||| |||||| | |||    
T  28386629 ctgctcttttactcgttttta-gttgccatctgataacaggttaggtactttcaatatttattagcttcctctttagcatgaactcagtagaaggatatt 28386727  T
Q  135 tagtgttgaatttaattatgtctgagtag 163  Q
    ||||||| |||||||||||||||||||||    
T  28386728 tagtgtttaatttaattatgtctgagtag 28386756  T

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Target: scaffold0564 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 104 - 1
Alignment:
Q  35 ctgctcttttacttctttttaagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaatagaagtaaatt 134  Q
    |||||||||||||  |||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| || ||||| ||||| ||| |||||| | |||    
T  104 ctgctcttttactcgttttta-gttgccatctgataacaggttaggtactttcaatatttattagcttcctctttagcatgaactcagtagaaggatatt 6  T
Q  135 tagtg 139  Q
    |||||    
T  5 tagtg 1  T

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Target: scaffold0205 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 2954 - 3028
Alignment:
Q  144 atttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatt 218  Q
    ||||||||||||||||||||||||  ||| | |||||| |||||||||  |||||||||||||||||||||||||    
T  2954 atttaattatgtctgagtagtctactttgtgaccaaaatgaaaggaccgacgtaccgacggaactcatgtaaatt 3028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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